Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5214 and PP_5215 are separated by 227 nucleotidesPP_5215 and PP_5216 are separated by 253 nucleotidesPP_5216 and PP_5217 overlap by 14 nucleotidesPP_5217 and PP_5218 are separated by 273 nucleotides PP_5214: PP_5214 - transcription termination factor Rho, at 5,947,214 to 5,948,473 _5214 PP_5215: PP_5215 - thioredoxin I, at 5,948,701 to 5,949,030 _5215 PP_5216: PP_5216 - exopolyphosphatase, at 5,949,284 to 5,950,786 _5216 PP_5217: PP_5217 - Polyphosphate kinase, at 5,950,773 to 5,952,956 _5217 PP_5218: PP_5218 - DedA family protein, at 5,953,230 to 5,953,874 _5218
Group Condition PP_5214 PP_5215 PP_5216 PP_5217 PP_5218
nitrogen source D-2-Aminobutyric (N) N.D. N.D. -3.2 -6.8 +0.2
nitrogen source D-2-Aminobutyric (N) N.D. N.D. -2.2 -7.0 -0.1
phage PUT 8 MOI 1 N.D. N.D. -1.3 -5.8 -0.7
phage PUT8 MOI 0.1 N.D. N.D. -0.4 -6.3 -1.0
carbon source Beta-alanine (C) N.D. N.D. -1.8 -5.4 -0.4
nitrogen source nitrogen source nitrite 0.5mM N.D. N.D. -4.2 -1.1 -0.5
phage PUT8 MOI 0.1 N.D. N.D. +0.0 -5.3 -0.6
carbon source 4-Methyl-2-oxopentanoic (C) N.D. N.D. -1.3 -4.3 +0.0
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. -1.8 -4.1 +0.4
temperature shift Temperature shift 30_to_4 N.D. N.D. -1.1 -4.4 +0.1
temperature shift Temperature shift 30_to_4 N.D. N.D. -1.6 -3.9 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. +0.6 -1.1 -4.8
carbon source 4-Methyl-2-oxopentanoic (C) N.D. N.D. -1.2 -4.0 -0.0
carbon source Beta-alanine (C) N.D. N.D. +0.2 -5.3 +0.0
phage PUT8 MOI 10 N.D. N.D. -1.2 -3.3 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -2.3 -2.3 -0.3
carbon source Vanillin (C) N.D. N.D. -1.6 -3.5 +0.2
pH Growth at pH9 and (C) D-Glucose N.D. N.D. -2.0 -3.2 +0.4
carbon source Vanillin (C) N.D. N.D. -2.4 -2.6 +0.3
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. -1.5 -3.9 +0.7
carbon source acetate (C) N.D. N.D. -0.2 -4.7 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. +0.7 -1.0 -3.9
temperature Growth at 34C N.D. N.D. -2.2 -2.7 +0.8
pH Growth at pH9 and (C) D-Glucose N.D. N.D. -2.0 -2.4 +0.6
stress Growth with Chloride 500 mM; with MOPS N.D. N.D. -1.5 -3.0 +0.8
temperature shift Temperature shift 30_to_4 N.D. N.D. +0.7 -4.6 +0.4
phage P. putida South MOI 0.1 N.D. N.D. +1.2 -2.7 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +2.2 -2.5 -0.9
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. -3.1 +1.1 +2.1
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. N.D. -2.0 +1.4 +1.8
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