Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5205	PP_5206	PP_5207	PP_5208	PP_5722
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-1.1	-0.2	+0.0	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.0	+0.1	-0.0	-0.6	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.6	+0.2	-0.3	-0.3
carbon source	L-Leucine (C)	-0.4	-0.3	+0.1	-0.4	-0.2
nitrogen source	Ammonium chloride (N)	-0.6	-0.6	+0.1	-0.1	+0.2
pH	pH 8	-0.9	-0.5	+0.0	+0.4	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.2	-0.0	+0.3	-0.6
nitrogen source	nitrate (N)	+0.2	+0.1	-0.3	-0.4	-0.5
pH	pH 5	-0.2	-1.1	-0.0	+0.5	+0.0
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.6	-0.7	-0.1	+0.4	+0.1
nitrogen source	NAG (N); with MOPS	-0.4	-0.8	+0.2	+0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.2	+0.3	-0.4	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	+0.3	-0.7	-0.1	-0.4	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	-0.3	-0.5	-0.4	+0.3
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.3	-0.5	-0.1	+0.4	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	-0.3	+0.2	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.4	-0.2	+0.4	+0.2
pH	Growth at pH8 and (C) D-Glucose	+0.5	+0.1	-0.3	-0.5	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	-0.0	+0.1	-0.3	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5	-0.0	+0.1	-0.5	-0.4
carbon source	Tween 20 (C)	+0.5	-0.5	+0.0	-0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7	+0.1	-0.1	+0.3	+0.1
pH	Growth at pH9 and (C) Trisodium citrate	+0.4	-0.7	+0.1	+0.4	-0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.2	-0.5	+0.3	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.2	+0.1	-0.4	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7	-0.3	+0.2	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	-0.2	+0.1	+0.4	+0.6
stress	R2A with Fusaric 480 ug/mL	+0.3	+0.4	+0.4	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	+0.6	+0.2	+0.4	+0.1
phage	P. putida Sci small MOI 0.1	+0.0	+0.5	+0.3	+0.6	+0.4