Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5144 and PP_5145 are separated by 133 nucleotidesPP_5145 and PP_5146 are separated by 22 nucleotidesPP_5146 and PP_5147 are separated by 141 nucleotidesPP_5147 and PP_5148 are separated by 130 nucleotides PP_5144: PP_5144 - conserved protein of unknown function, at 5,869,493 to 5,870,239 _5144 PP_5145: PP_5145 - phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins), at 5,870,373 to 5,872,652 _5145 PP_5146: PP_5146 - RNA pyrophosphohydrolase, at 5,872,675 to 5,873,154 _5146 PP_5147: PP_5147 - Hydrolase, haloacid dehalogenase-like family, at 5,873,296 to 5,873,952 _5147 PP_5148: PP_5148 - conserved membrane protein of unknown function, at 5,874,083 to 5,874,508 _5148
Group Condition PP_5144 PP_5145 PP_5146 PP_5147 PP_5148
nitrogen source D-2-Aminobutyric (N) +0.1 -3.6 -3.7 -0.6 -0.2
nitrogen source Propandiamine (N) -0.4 -2.8 -4.6 +0.1 +0.0
phage PUT8 MOI 0.1 -0.6 -3.7 -3.1 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 -5.9 -1.6 -0.2 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -5.8 -1.5 -0.1 +0.1
nitrogen source D-2-Aminobutyric (N) -0.6 -3.8 -2.8 -0.4 +0.5
phage PUT8 MOI 0.1 +0.1 -4.0 -3.8 +0.1 +0.4
phage PUT 8 MOI 1 +0.3 -3.1 -4.4 -0.1 +0.3
phage P. putida South MOI 10 +0.1 -2.6 -4.1 -0.2 -0.1
nitrogen source L-Leucine (N) -0.2 -3.3 -3.2 -0.1 +0.1
phage P. putida South MOI 10 -0.5 -2.8 -3.6 +0.1 +0.1
phage P. putida PUT10 MOI 10 +0.0 -3.6 -3.1 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -4.9 -1.3 -0.1 +0.2
nitrogen source Propandiamine (N) +0.0 -1.7 -4.5 -0.0 +0.1
phage P. putida PUT10 MOI 0.1 -0.1 -3.4 -2.9 +0.2 +0.2
phage P. put South MOI 1 -0.2 -3.1 -2.7 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.0 -4.9 -1.2 -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -3.8 -1.4 +0.3 -0.2
phage P. putida PUT10 MOI 10 +0.0 -3.5 -2.5 +0.2 +0.1
phage P. putida PUT10 MOI 1 -0.5 -3.7 -1.9 +0.2 +0.2
phage P. putida PUT10 MOI 0.1 -0.3 -3.2 -2.5 +0.2 +0.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.1 -3.4 -2.5 +0.2 +0.0
phage P. put PUT 10 MOI 10 -0.5 -3.1 -2.3 +0.1 +0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 -2.1 -3.5 -0.0 -0.2
phage P. putida South MOI 1 +0.2 -3.7 -2.2 +0.1 +0.2
carbon source 3-methyl-2-oxopentanoic (C) +0.1 +3.7 +2.5 -0.3 +0.0
carbon source 3-methyl-2-oxopentanoic (C) -0.2 +4.3 +2.6 -0.1 -0.1
carbon source 4-Hydroxyvalerate (C) (40mM) -0.5 +5.4 +2.9 -0.3 -0.1
carbon source Hexanoic (C) +0.6 +4.9 +2.0 -0.1 +0.1
carbon source 4-Hydroxyvalerate (C) (40mM) -0.5 +6.1 +3.1 -0.3 -0.3
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