Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5138 and PP_5139 are separated by 9 nucleotidesPP_5139 and PP_5140 are separated by 83 nucleotidesPP_5140 and PP_5141 are separated by 56 nucleotidesPP_5141 and PP_5142 are separated by 51 nucleotides PP_5138: PP_5138 - putative transcriptional regulator LysR family, at 5,863,019 to 5,863,888 _5138 PP_5139: PP_5139 - cadmium translocating P-type ATPase, at 5,863,898 to 5,866,150 _5139 PP_5140: PP_5140 - Transcriptional regulator, MerR family, at 5,866,234 to 5,866,677 _5140 PP_5141: PP_5141 - Thymidylate synthase, at 5,866,734 to 5,867,705 _5141 PP_5142: PP_5142 - Prolipoprotein diacylglyceryl transferase, at 5,867,757 to 5,868,563 _5142
Group Condition PP_5138 PP_5139 PP_5140 PP_5141 PP_5142
micoeukaryotes C.elegans, mixed culture-1 +0.0 -3.6 -2.8 N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.3 -3.8 -1.9 N.D. N.D.
supernatant LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter -0.1 -1.7 -2.6 N.D. N.D.
nitrogen source NAG (N); with MOPS +0.0 -2.8 -1.3 N.D. N.D.
pH Growth at pH7 and (C) D-Glucose +0.3 -0.4 -4.0 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.1 -1.0 -3.0 N.D. N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 -3.1 -0.7 N.D. N.D.
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.2 -2.9 -0.7 N.D. N.D.
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.1 -0.6 -2.6 N.D. N.D.
pH LB 0.1x with 55.5 mM D-Glucose; pH 4.6 -0.0 -1.5 -1.6 N.D. N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.2 -3.3 -0.1 N.D. N.D.
dilutelb LB 0.1x with 55.5 mM D-Glucose +0.0 -1.6 -1.0 N.D. N.D.
carbon source L-tyrosine 5 mM (C) -0.0 -1.2 -0.8 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.3 -0.9 N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM +0.1 -1.1 -1.0 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.3 -2.4 +0.2 N.D. N.D.
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.1 -1.7 +0.2 N.D. N.D.
phage P. putida Sci Big MOI 0.1 -0.3 +0.5 -1.3 N.D. N.D.
carbon source Crotonic (C) -0.1 +0.7 -1.4 N.D. N.D.
carbon source carbon source 4-vinylphenol 0.1 mM +0.1 +0.9 -1.7 N.D. N.D.
carbon source acetate (C) +0.2 -1.3 +0.6 N.D. N.D.
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.3 +0.7 -1.2 N.D. N.D.
nitrogen source D-2-Aminobutyric (N) -0.8 -0.4 +1.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.8 -1.0 N.D. N.D.
temperature Growth at 25C +0.5 -1.1 +0.9 N.D. N.D.
pH Valerolactone (C) pH 6.5 -0.5 +0.0 +1.6 N.D. N.D.
carbon source 2,3-Butanediol (C) -0.3 +1.1 +0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +0.7 +0.6 N.D. N.D.
nitrogen source Propandiamine (N) -0.1 +0.6 +1.6 N.D. N.D.
carbon source Myristic (C) +0.2 +0.7 +1.1 N.D. N.D.
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