Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_5135	PP_5136	PP_5137	PP_5138	PP_5139
micoeukaryotes	C.elegans, mixed culture-1	-0.1	-0.0	-0.2	+0.0	-3.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.1	+0.0	-0.7	+0.2	-2.9
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.0	+0.1	+0.0	+0.3	-3.8
nitrogen source	NAG (N); with MOPS	-0.4	-0.0	+0.0	+0.0	-2.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.1	+0.1	+0.2	+0.2	-3.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.5	-0.1	-0.2	+0.2	-3.1
phage	P. putida Sci small MOI 0.1	-0.7	-0.2	-0.7	+0.0	-0.6
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.0	+0.3	-0.2	+0.3	-2.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.1	-0.1	-0.8	-0.1	-0.8
supernatant	LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter	+0.0	+0.1	-0.3	-0.1	-1.7
stress	R2A with Fusaric 240 ug/mL	-0.2	+0.2	-0.2	-0.0	-1.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	+0.1	-1.1	-0.3	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.2	-0.3	+0.1	+0.3	-1.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.1	-0.8	+0.1	-1.1
dilutelb	LB 0.1x with 55.5 mM D-Glucose	-0.2	-0.0	+0.2	+0.0	-1.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.0	-0.0	+0.1	+0.1	-1.7
carbon source	acetate (C)	+0.1	-0.0	-0.4	+0.2	-1.3
temperature shift	Temperature shift 30_to_25	-0.5	+0.1	+0.2	+0.1	-1.4
temperature	Growth at 25C	+0.1	+0.0	-0.7	+0.5	-1.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.2	+0.1	-0.1	-1.4
nitrogen source	no extra (N); with MOPS	-0.4	-0.1	-0.3	+0.3	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.2	+0.1	+0.2	-0.9
nitrogen source	nitrogen source nitrite 0.5mM	+0.2	+0.2	-0.5	+0.1	-1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.0	+0.4	+0.2	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.2	+0.4	-0.2	-1.1
phage	P. putida Sci Big MOI 0.1	-0.7	-0.2	-0.3	-0.3	+0.5
nitrogen source	D-2-Aminobutyric (N)	-0.2	+0.2	+0.6	-0.8	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.2	+0.3	+0.3	+0.5	-0.8
pH	pH 8	-0.5	-0.1	+0.6	+0.0	+0.9
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.2	-0.1	+0.8	-0.1	+0.6