Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5114 and PP_5115 are separated by 90 nucleotidesPP_5115 and PP_5116 overlap by 8 nucleotidesPP_5116 and PP_5117 are separated by 60 nucleotidesPP_5117 and PP_5118 are separated by 102 nucleotides PP_5114: PP_5114 - putative adenine methyltransferase, at 5,835,213 to 5,835,815 _5114 PP_5115: PP_5115 - putative Zinc protease, at 5,835,906 to 5,837,207 _5115 PP_5116: PP_5116 - conserved protein of unknown function, at 5,837,200 to 5,838,570 _5116 PP_5117: PP_5117 - putative hydrolase, at 5,838,631 to 5,839,623 _5117 PP_5118: PP_5118 - putative 3-mercaptopyruvate sulfurtransferase, at 5,839,726 to 5,840,580 _5118
Group Condition PP_5114 PP_5115 PP_5116 PP_5117 PP_5118
phage P. put South MOI 0.1 -6.7 -0.1 -0.1 -0.1 -0.1
phage P. put South MOI 0.1 -6.6 -0.1 -0.1 -0.2 -0.0
phage P. put PUT 10 MOI 10 -6.8 +0.0 +0.1 -0.1 -0.3
phage P. putida PUT10 MOI 1 -6.7 -0.1 -0.0 -0.1 -0.0
phage P. put South MOI 1 -6.9 -0.0 +0.0 -0.0 +0.1
phage PUT8 MOI 0.1 -6.9 -0.1 +0.1 -0.0 -0.0
phage PUT8 MOI 0.1 -6.8 -0.1 +0.1 +0.2 -0.2
phage P. putida PUT10 MOI 10 -6.7 +0.0 -0.1 -0.0 +0.0
phage P. put PUT 10 MOI 1 -6.6 -0.1 -0.1 +0.0 -0.1
phage P. putida PUT10 MOI 10 -6.7 +0.0 -0.0 +0.0 -0.0
phage P. putida South MOI 0.1 -6.6 -0.2 +0.2 +0.0 +0.0
phage PUT8 MOI 10 -6.8 +0.0 +0.2 +0.0 +0.3
phage PUT 8 MOI 1 -6.8 +0.1 -0.0 +0.1 +0.7
phage P. putida PUT10 MOI 0.1 -5.5 -0.0 +0.0 -0.2 -0.1
phage P. put South MOI 1 -5.7 +0.1 -0.0 -0.0 +0.0
phage P. putida PUT10 MOI 1 -5.4 +0.2 -0.2 -0.1 -0.1
pH Growth at pH7 and (C) Trisodium citrate -5.5 +0.1 +0.1 -0.2 +0.2
phage P. put PUT 10 MOI 0.1 -4.9 -0.1 -0.0 -0.1 -0.1
phage P. put PUT 10 MOI 1 -4.8 -0.0 +0.1 -0.3 -0.2
phage P. put PUT 10 MOI 0.1 -4.9 +0.0 -0.1 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -5.2 +0.1 +0.1 +0.2 +0.1
phage P. putida PUT10 MOI 0.1 -4.7 -0.0 +0.1 -0.1 +0.0
carbon source Tween 20 (C) -4.5 -0.4 +0.2 +0.0 +0.0
carbon source ferulate (C); with MOPS -4.3 +0.0 +0.1 -0.2 -0.2
phage PUT8 MOI 10 -4.5 -0.2 +0.0 +0.2 -0.0
phage P. put South MOI 10 -4.3 -0.3 +0.2 +0.1 +0.1
phage P. putida South MOI 0.1 -4.2 +0.1 -0.0 +0.1 +0.1
micoeukaryotes C.elegans, mixed culture-1 -3.7 +0.1 +0.1 +0.2 -0.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 -3.8 -0.1 +0.2 +0.2 -0.5
carbon source Delta-Decalactone (C) -3.9 +0.0 +0.1 +0.4 -0.2
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