Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5106 and PP_5107 are separated by 64 nucleotidesPP_5107 and PP_5108 are separated by 198 nucleotidesPP_5108 and PP_5109 are separated by 111 nucleotidesPP_5109 and PP_5110 overlap by 4 nucleotides PP_5106: PP_5106 - conserved inner membrane protein, at 5,826,652 to 5,827,023 _5106 PP_5107: PP_5107 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 5,827,088 to 5,827,798 _5107 PP_5108: PP_5108 - RNA polymerase factor sigma-32, at 5,827,997 to 5,828,851 _5108 PP_5109: PP_5109 - membrane component of the ABC transporter FtsEX involved in cellular division, at 5,828,963 to 5,829,988 _5109 PP_5110: PP_5110 - cytokinetic ring ABC transporter-like subunit - ATP-binding subunit, at 5,829,985 to 5,830,662 _5110
Group Condition PP_5106 PP_5107 PP_5108 PP_5109 PP_5110
carbon source Delta-Nonalactone (C) +0.4 +0.2 N.D. -4.8 -2.8
nitrogen source D-2-Aminobutyric (N) -0.5 -0.6 N.D. -0.4 -2.9
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.4 N.D. -0.0 -3.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.4 -0.5 N.D. -0.4 -1.6
nitrogen source Propandiamine (N) +0.2 -0.2 N.D. -1.3 -2.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.4 N.D. -0.2 -3.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.6 -0.0 N.D. -1.1 -1.9
stress 1-Pentanol 0.3 vol% +0.3 -0.5 N.D. -1.6 -1.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 -1.2 N.D. -1.1 -1.4
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.0 +0.2 N.D. -0.3 -3.1
pH pH 6 +0.0 -0.1 N.D. -0.3 -2.8
carbon source 2,3-Butanediol (C) +0.0 +0.2 N.D. -1.0 -2.1
carbon source Delta-Decalactone (C) +0.9 +0.1 N.D. -2.6 -1.3
carbon source Delta-Decalactone (C) -0.1 +0.1 N.D. -2.3 -0.6
nitrogen source Propiolactam (N) -0.1 -1.0 N.D. +0.2 -2.0
carbon source Decanoic (C) -0.0 +0.2 N.D. -1.5 -1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 -0.3 N.D. -1.1 -1.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 -0.5 N.D. +0.2 -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.4 N.D. -0.6 -2.4
pH pH 9 -1.4 -0.7 N.D. -0.6 +0.5
pH Growth at pH7 and (C) D-Glucose -1.8 +0.6 N.D. +0.3 -1.0
pH D-Glucose (C) pH 7 +0.1 +0.4 N.D. -0.2 -2.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.6 -1.4 N.D. -0.3 -0.6
nitrogen source D-2-Aminobutyric (N) +0.7 -0.4 N.D. -0.8 -1.1
pH Valerolactone (C) pH 6.5 +0.6 +0.1 N.D. -0.7 -1.4
carbon source Trisodium citrate (C) +0.7 +0.1 N.D. +0.0 -2.1
carbon source D-Glucose (C); with MOPS -2.1 +0.4 N.D. +0.0 +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 -0.4 N.D. +1.0 +1.0
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.4 +0.9 N.D. -0.4 +1.2
pH Growth at pH9 and (C) Trisodium citrate +0.5 +0.5 N.D. +0.4 +1.6
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