Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5088 and PP_5089 are separated by 187 nucleotidesPP_5089 and PP_5090 are separated by 1 nucleotidesPP_5090 and PP_5091 are separated by 90 nucleotidesPP_5091 and PP_5092 are separated by 164 nucleotides PP_5088: PP_5088 - primosome assembly protein, at 5,810,673 to 5,812,892 _5088 PP_5089: PP_5089 - arginyl-tRNA synthetase, at 5,813,080 to 5,814,816 _5089 PP_5090: PP_5090 - putative cell division protein, at 5,814,818 to 5,815,516 _5090 PP_5091: PP_5091 - conserved membrane protein of unknown function, at 5,815,607 to 5,816,026 _5091 PP_5092: PP_5092 - putative exported NLP/P60 protein, at 5,816,191 to 5,816,814 _5092
Group Condition PP_5088 PP_5089 PP_5090 PP_5091 PP_5092
micoeukaryotes Tetrahymena sp., Mixed culture-2 N.D. N.D. -7.1 +0.9 -1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -3.0 -0.2 -1.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -2.8 -0.2 -1.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. N.D. -4.1 -0.1 -0.5
pH D-Glucose (C) pH 6.5 N.D. N.D. -4.6 +0.1 -0.1
nitrogen source D-2-Aminobutyric (N) N.D. N.D. -4.4 +0.3 -0.4
carbon source carbon source D-Glucose 55.5 mM N.D. N.D. -3.8 -0.2 -0.3
carbon source 2-Methylbutanoic (C) N.D. N.D. -4.3 -0.1 +0.2
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. -4.4 +1.2 -0.9
pH pH 4 N.D. N.D. -4.0 +0.3 -0.3
carbon source carbon source Bisabolene 48.9 mM N.D. N.D. -4.1 +0.3 -0.1
pH pH 5 N.D. N.D. -4.0 +0.4 -0.2
nitrogen source D-2-Aminobutyric (N) N.D. N.D. -4.2 +0.6 -0.2
pH pH 9 N.D. N.D. -3.8 +0.2 -0.1
pH pH 7 N.D. N.D. -3.1 -0.5 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs N.D. N.D. -3.1 -0.2 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -3.3 -0.3 +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. -2.0 -0.2 -1.4
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM N.D. N.D. -3.2 +0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. -2.9 -0.2 -0.1
pH pH 6 N.D. N.D. -3.1 +0.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -2.1 -0.8 -0.2
carbon source carbon source 2-Deoxy-D-glucose 50 mM N.D. N.D. -3.4 +0.4 -0.1
carbon source Trisodium citrate (C) N.D. N.D. -2.7 -0.1 -0.2
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. -2.9 -0.1 +0.0
reactor_pregrowth Adaptation in M9 media timecourse 1; day 3 N.D. N.D. -2.9 +0.1 -0.2
microaerobic m9 microaerobic M9 N.D. N.D. -3.0 +0.0 +0.0
carbon source carbon source 4-vinylphenol 0.01 mM N.D. N.D. -3.2 +0.3 +0.1
micoeukaryotes C.elegans, mixed culture-1 N.D. N.D. -1.9 +0.6 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -2.6 +0.4 -0.1
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