Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_5084 and PP_5085 are separated by 154 nucleotidesPP_5085 and PP_5086 are separated by 177 nucleotidesPP_5086 and PP_5087 are separated by 56 nucleotidesPP_5087 and PP_5088 are separated by 80 nucleotides PP_5084: PP_5084 - penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase, at 5,805,412 to 5,807,865 _5084 PP_5085: PP_5085 - malic enzyme B, at 5,808,020 to 5,809,288 _5085 PP_5086: PP_5086 - putative nuclease (SNase domain protein), at 5,809,466 to 5,810,233 _5086 PP_5087: PP_5087 - ribosomal protein L31, at 5,810,290 to 5,810,592 _5087 PP_5088: PP_5088 - primosome assembly protein, at 5,810,673 to 5,812,892 _5088
Group Condition PP_5084 PP_5085 PP_5086 PP_5087 PP_5088
carbon source 2,3-Butanediol (C) -1.8 -4.3 +0.2 N.D. N.D.
stress R2A with Fusaric 480 ug/mL -5.8 +0.2 +0.1 N.D. N.D.
carbon source 3-Hydroxypropionate (C) -0.3 -5.1 +0.2 N.D. N.D.
stress R2A with Fusaric 480 ug/mL -5.5 +0.4 -0.1 N.D. N.D.
stress R2A with Fusaric 480 ug/mL -5.2 +0.0 -0.0 N.D. N.D.
carbon source butyrate (C) -1.5 -3.6 -0.1 N.D. N.D.
stress R2A with Fusaric 480 ug/mL -5.3 +0.3 -0.1 N.D. N.D.
carbon source 3-Hydroxypropionate (C) -0.3 -4.5 +0.1 N.D. N.D.
carbon source Beta-alanine (C) +0.1 -4.8 -0.0 N.D. N.D.
stress R2A with Fusaric 480 ug/mL -5.0 +0.4 +0.0 N.D. N.D.
carbon source Octanoic (C) +0.0 -4.4 -0.0 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -4.4 -0.0 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -4.5 +0.1 N.D. N.D.
carbon source D-Lysine 10 mM (C) +0.2 -4.7 +0.4 N.D. N.D.
carbon source Beta-alanine (C) -0.0 -4.2 +0.2 N.D. N.D.
stress R2A with Fusaric 480 ug/mL -4.2 +0.3 -0.1 N.D. N.D.
carbon source butyrate (C) -0.9 -3.3 +0.3 N.D. N.D.
carbon source Myristic (C) +0.1 -3.7 -0.2 N.D. N.D.
carbon source Oleic (C) -0.7 -3.1 +0.0 N.D. N.D.
carbon source ferulate (C); with MOPS -3.1 -0.3 -0.3 N.D. N.D.
carbon source ferulate (C); with MOPS -2.9 -0.4 -0.3 N.D. N.D.
carbon source Lauric (C) -0.4 -3.4 +0.2 N.D. N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.0 -2.4 -0.2 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.2 -0.3 +0.1 N.D. N.D.
carbon source Delta-Decalactone (C) -0.7 -3.1 +0.5 N.D. N.D.
carbon source 3-methyl-1-butanol (C) -1.4 -2.2 +0.2 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.6 -0.7 +0.3 N.D. N.D.
carbon source Butanol (C) +0.6 -3.6 +0.1 N.D. N.D.
carbon source D-Lysine 10 mM (C) +0.8 -3.8 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 +2.3 -0.1 N.D. N.D.
remove
PP_5084
plot		 remove
PP_5085
plot		 remove
PP_5086		 remove
PP_5087
plot		 remove
PP_5088
plot