Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5078	PP_5079	PP_5080	PP_5081	PP_5082
carbon source	Delta-Nonalactone (C)	N.D.	N.D.	-0.6	-0.5	-0.3
pH	pH 8	N.D.	N.D.	-1.1	-0.2	+0.0
phage	P. putida PUT 7 MOI 1	N.D.	N.D.	-0.9	-0.6	+0.2
phage	P. putida Sci Big MOI 0.1	N.D.	N.D.	-0.2	-0.3	-0.6
carbon source	Tween 20 (C)	N.D.	N.D.	-0.1	-0.4	-0.6
nitrogen source	2,6-diaminopimelic (N)	N.D.	N.D.	+0.0	-0.2	-0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	N.D.	N.D.	-0.7	-0.0	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	N.D.	N.D.	-1.0	+0.1	-0.1
carbon source	Delta-Decalactone (C)	N.D.	N.D.	-0.7	-0.3	+0.0
carbon source	acetate (C)	N.D.	N.D.	-1.0	+0.1	+0.0
nitrogen source	D-2-Aminobutyric (N)	N.D.	N.D.	-0.6	-0.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.0	+0.0	-0.9
pH	Growth at pH7 and (C) D-Glucose	N.D.	N.D.	-0.9	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.5	+0.1	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	N.D.	N.D.	-0.8	+0.2	+0.2
carbon source	3-methyl-1-butanol 0.1 vol% (C)	N.D.	N.D.	-0.6	-0.1	+0.4
temperature shift	Temperature shift 10_to_34; with MOPS	N.D.	N.D.	-0.6	+0.1	+0.2
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	N.D.	N.D.	-0.4	-0.2	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	N.D.	N.D.	-0.6	+0.2	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	N.D.	-0.6	+0.3	+0.2
temperature shift	Temperature shift 10_to_25; with MOPS	N.D.	N.D.	-0.4	+0.3	+0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	N.D.	N.D.	-0.3	+0.2	+0.4
carbon source	ferulate (C); with MOPS	N.D.	N.D.	+0.7	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	-0.1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	N.D.	+0.8	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	+0.5	+0.1
temperature	Growth at 25C	N.D.	N.D.	+0.4	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.8	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.8	+0.1	+0.8