Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5038 and PP_5039 are separated by 227 nucleotidesPP_5039 and PP_5040 are separated by 3 nucleotidesPP_5040 and PP_5041 are separated by 246 nucleotidesPP_5041 and PP_5042 are separated by 166 nucleotides PP_5038: PP_5038 - conserved lipoprotein of unknown function, at 5,741,075 to 5,741,329 _5038 PP_5039: PP_5039 - conserved protein of unknown function, at 5,741,557 to 5,742,153 _5039 PP_5040: PP_5040 - fructose-1,6-bisphosphatase, class 1, at 5,742,157 to 5,743,167 _5040 PP_5041: PP_5041 - glycogen phosphorylase, at 5,743,414 to 5,745,864 _5041 PP_5042: PP_5042 - conserved protein of unknown function, at 5,746,031 to 5,746,453 _5042
Group Condition PP_5038 PP_5039 PP_5040 PP_5041 PP_5042
temperature shift Temperature shift 30_to_4; with MOPS -0.3 -4.0 N.D. +0.1 -0.2
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -0.8 N.D. +0.1 -1.9
phage PUT8 MOI 0.1 -1.0 -1.8 N.D. -0.1 -0.1
stress R2A with Fusaric 480 ug/mL -0.2 -1.0 N.D. -0.8 -0.5
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -1.9 -1.1 N.D. +0.1 +0.4
phage P. putida South MOI 10 -1.0 -1.0 N.D. +0.1 -0.5
carbon source D-Glucose (C) -0.1 -1.9 N.D. +0.1 -0.4
phage P. put South MOI 10 -1.3 -0.9 N.D. +0.2 -0.1
stress Growth with Chloride 500 mM -2.2 -0.5 N.D. +0.2 +0.3
nitrogen source NAG (N); with MOPS -2.0 -1.1 N.D. +0.2 +1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.3 -2.2 N.D. -0.2 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.3 -1.2 N.D. -0.5 +0.4
phage PUT 8 MOI 1 +0.7 -1.9 N.D. -0.2 +0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.4 -0.9 N.D. +0.2 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 -1.1 N.D. -0.8 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.0 +0.9 N.D. -0.3 -0.6
pH Growth at pH7 and (C) Trisodium citrate +1.1 -1.8 N.D. +0.3 -0.5
carbon source carbon source 2-Deoxy-D-glucose 10 mM +1.1 -1.3 N.D. -0.1 -0.2
carbon source Valeric (C) -1.3 -0.2 N.D. +0.2 +0.8
carbon source L-Leucine (C) -0.6 +1.4 N.D. +0.2 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +0.8 N.D. -1.5 +0.5
nitrogen source D-2-Aminobutyric (N) +1.1 -1.5 N.D. +0.2 +1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +1.5 N.D. -1.1 +0.4
carbon source D-Glucose (C); with MOPS +0.5 +1.3 N.D. +0.2 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.3 +0.7 N.D. -0.6 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.0 +0.9 N.D. -0.8 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.6 N.D. -0.0 -0.5
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM +1.4 -0.2 N.D. +0.1 +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +0.6 N.D. -0.4 +1.3
phage P. putida Missley MOI 0.1 +0.6 +1.4 N.D. +0.3 +0.6
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