Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5006 and PP_5007 are separated by 111 nucleotidesPP_5007 and PP_5008 are separated by 10 nucleotidesPP_5008 and PP_5009 are separated by 180 nucleotidesPP_5009 and PP_5010 are separated by 18 nucleotides PP_5006: PP_5006 - Transcriptional regulator, TetR family, at 5,703,861 to 5,704,475 _5006 PP_5007: PP_5007 - Polyhydroxyalkanoate granule-associated protein GA2, at 5,704,587 to 5,705,372 _5007 PP_5008: PP_5008 - Poly granule-associated protein, at 5,705,383 to 5,705,802 _5008 PP_5009: PP_5009 - conserved protein of unknown function, at 5,705,983 to 5,710,743 _5009 PP_5010: PP_5010 - conserved protein of unknown function, at 5,710,762 to 5,711,097 _5010
Group Condition PP_5006 PP_5007 PP_5008 PP_5009 PP_5010
pH Growth at pH7 and (C) D-Glucose +0.1 -5.3 -4.1 +0.4 N.D.
pH Growth at pH6 and (C) D-Glucose +0.5 -5.2 -4.1 +0.1 N.D.
carbon source acetate (C) -0.1 -2.1 -4.0 -0.1 N.D.
carbon source Myristic (C) -0.3 -4.3 -1.8 +0.1 N.D.
temperature shift Temperature shift 10_to_25; with MOPS -0.2 -4.1 -1.4 +0.0 N.D.
nitrogen source Urea (N) +0.1 -1.3 -4.0 +0.1 N.D.
nitrogen source D-2-Aminobutyric (N) -0.1 -2.4 -2.2 -0.1 N.D.
nitrogen source Ammonium chloride (N) -0.2 -1.8 -2.2 -0.1 N.D.
phage P. putida PUT 7 MOI 1 -0.4 -0.9 -2.8 -0.1 N.D.
nitrogen source Urea (N); with MOPS -0.2 +0.1 -4.0 +0.1 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.7 -1.7 -1.7 +0.1 N.D.
pH Growth at pH6 and (C) Trisodium citrate -0.2 -0.0 -3.9 +0.1 N.D.
pH pH 6 -0.3 -2.6 -1.0 +0.0 N.D.
carbon source Lauric (C) +0.5 -4.0 -0.5 +0.1 N.D.
temperature Growth at 25C; with MOPS -0.1 -2.7 -1.0 -0.0 N.D.
pH Growth at pH8 and (C) Trisodium citrate +0.2 +0.0 -4.1 +0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.0 -3.3 -0.5 +0.1 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.4 +0.1 -3.2 +0.2 N.D.
carbon source Lauric (C) +0.2 -3.0 -0.5 +0.1 N.D.
carbon source Delta-Dodecalactone (C) +2.5 -2.9 -2.4 +0.0 N.D.
carbon source 3-Hydroxydecanoic (C) +2.8 -2.3 -2.9 +0.1 N.D.
carbon source Delta-Dodecalactone (C) +2.8 -3.7 -1.3 -0.1 N.D.
carbon source D-Glucose (C) -0.2 -2.9 +0.7 +0.2 N.D.
nitrogen source nitrate (N) +0.0 -3.1 +1.2 -0.1 N.D.
temperature shift Temperature shift 30_to_21; with MOPS -0.4 -2.2 +1.3 -0.0 N.D.
carbon source 5-Hydroxydodecanoate (C) +3.5 -2.5 -2.5 +0.1 N.D.
carbon source 5-Hydroxydodecanoate (C) +3.6 -2.5 -2.3 +0.2 N.D.
carbon source 3-Hydroxydecanoic (C) +2.9 -1.3 -2.5 +0.1 N.D.
carbon source Decanoic (C) +1.5 -1.9 -0.5 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 -1.8 +1.3 -0.1 N.D.
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