Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4984 and PP_4985 are separated by 163 nucleotidesPP_4985 and PP_4986 are separated by 0 nucleotidesPP_4986 and PP_4987 are separated by 203 nucleotidesPP_4987 and PP_4988 overlap by 8 nucleotides PP_4984: PP_4984 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 5,678,375 to 5,679,781 _4984 PP_4985: PP_4985 - 16S rRNA m3U1498 methyltransferase, at 5,679,945 to 5,680,664 _4985 PP_4986: PP_4986 - Channel protein, hemolysin III family, at 5,680,665 to 5,681,282 _4986 PP_4987: PP_4987 - putative Chemotaxis protein, at 5,681,486 to 5,681,959 _4987 PP_4988: PP_4988 - signal transduction histidine kinase CheA/CheY-like receiver, at 5,681,952 to 5,686,892 _4988
Group Condition PP_4984 PP_4985 PP_4986 PP_4987 PP_4988
carbon source 3-methyl-1-butanol 0.1 vol% (C) -5.2 +0.8 +0.0 N.D. -1.2
pH D-Glucose (C) pH 6 -4.5 -0.0 -0.1 N.D. -0.9
phage FRSphage -4.4 -0.1 -0.0 N.D. -0.6
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -4.8 +0.2 -0.2 N.D. -0.2
no phage control Time6-nophage -4.2 -0.2 +0.2 N.D. -0.7
carbon source 3-methyl-1-butanol (C) -4.0 +0.3 +0.2 N.D. -1.3
phage moi 100 Time6-phageFRS -3.9 -0.2 -0.0 N.D. -0.6
temperature shift Temperature shift 10_to_25; with MOPS -3.0 -1.3 +0.0 N.D. -0.4
nitrogen source Propandiamine (N) -4.9 +0.6 -0.4 N.D. +0.0
pH D-Glucose (C) pH 7.5 -4.0 -0.2 +0.2 N.D. -0.6
pH Growth at pH8 and (C) D-Glucose -3.0 -0.3 -0.3 N.D. -1.0
carbon source 4-Methyl-2-oxopentanoic (C) -3.2 -0.2 -0.2 N.D. -0.9
no phage control no phage control -3.5 -0.2 -0.0 N.D. -0.8
temperature shift Temperature shift 30_to_25; with MOPS -4.0 +0.2 -0.7 N.D. +0.0
pH Growth at pH7 and (C) D-Glucose -2.9 +0.0 +0.1 N.D. -1.7
temperature Growth at 30C -3.1 -0.0 -0.3 N.D. -0.9
carbon source 4-Methyl-2-oxopentanoic (C) -3.9 -0.1 +0.1 N.D. -0.4
carbon source 3-methyl-1-butanol (C) -3.4 +0.1 -0.0 N.D. -1.0
phage FRSphage -3.8 -0.2 +0.1 N.D. -0.5
pH D-Glucose (C) pH 6 -3.9 +0.4 -0.2 N.D. -0.6
temperature Growth at 30C -3.4 +0.0 +0.1 N.D. -0.8
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -4.2 +0.3 +0.1 N.D. -0.1
phage moi 100 Time6-phageFRS -3.3 +0.2 -0.2 N.D. -0.6
temperature shift Temperature shift 10_to_25 -3.5 +0.2 +0.1 N.D. -0.6
nitrogen source Propandiamine (N) -4.6 +0.5 -0.2 N.D. +0.4
pH D-Glucose (C) pH 7 -3.4 +0.1 +0.2 N.D. -0.6
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -3.3 +0.0 +0.3 N.D. -0.7
temperature shift Temperature shift 30_to_25; with MOPS -3.1 +0.3 +0.1 N.D. -0.8
pH D-Glucose (C) pH 7 -3.3 +0.1 +0.4 N.D. -0.6
carbon source 3-methyl-1-butanol 0.25 vol% (C) -3.7 +0.1 +0.4 N.D. +0.8
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