Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4971 and PP_4972 are separated by 50 nucleotidesPP_4972 and PP_4973 are separated by 28 nucleotidesPP_4973 and PP_4974 are separated by 282 nucleotidesPP_4974 and PP_4975 are separated by 70 nucleotides PP_4971: PP_4971 - putative Outer membrane-bound lytic murein transglycolase A, at 5,663,227 to 5,664,405 _4971 PP_4972: PP_4972 - conserved exported protein of unknown function, at 5,664,456 to 5,664,842 _4972 PP_4973: PP_4973 - conserved membrane protein of unknown function, at 5,664,871 to 5,665,704 _4973 PP_4974: PP_4974 - NhaP-type Na+/H+ and K+/H+ antiporters, at 5,665,987 to 5,667,222 _4974 PP_4975: PP_4975 - Long-chain acyl-CoA thioester hydrolase family protein, at 5,667,293 to 5,667,694 _4975
Group Condition PP_4971 PP_4972 PP_4973 PP_4974 PP_4975
phage PUT 8 MOI 1 -1.3 -0.0 -0.2 -0.2 -0.8
phage P. putida South MOI 1 -2.0 +0.0 -0.2 -0.2 +0.2
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.2 -0.1 +0.2 +0.0 -2.0
phage P. putida PUT10 MOI 10 -1.6 -0.1 +0.1 -0.3 +0.1
phage P. putida PUT10 MOI 0.1 -1.3 +0.0 -0.3 -0.2 -0.0
phage P. put PUT 10 MOI 10 -1.6 +0.0 +0.2 -0.3 -0.1
phage P. putida PUT10 MOI 1 -1.7 -0.1 -0.2 -0.0 +0.3
phage P. putida PUT10 MOI 10 -1.7 -0.2 -0.0 -0.0 +0.2
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.0 +0.1 +0.1 +0.2 -2.1
phage PUT8 MOI 0.1 -1.7 +0.0 +0.2 -0.0 -0.2
pH Valerolactone (C) pH 6.5 -0.3 -0.3 +0.1 -0.0 -1.0
phage PUT8 MOI 0.1 -1.4 -0.0 +0.1 -0.2 +0.1
phage P. putida PUT10 MOI 0.1 -1.4 +0.1 -0.0 -0.2 +0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -1.3 +0.1 +0.0 +0.3 -0.5
phage P. put South MOI 1 -1.6 +0.0 -0.2 +0.3 +0.1
phage P. putida PUT10 MOI 1 -1.3 -0.1 -0.1 -0.2 +0.4
phage P. putida South MOI 0.1 -1.4 +0.0 -0.1 +0.1 +0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -1.2 +0.1 -0.3 +0.4 -0.0
carbon source D-Glucose (C) -0.0 +0.1 +0.2 -1.4 +0.1
nitrogen source NAG (N); with MOPS +0.4 -0.1 -1.0 +0.0 -0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.9 -0.1 +0.5 -0.3 +0.1
carbon source 3-methyl-1-butanol (C) -0.0 +0.2 +0.3 +0.2 -1.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 +0.1 +0.3 +0.2 -0.9
carbon source 4-Hydroxyvalerate (C) (40mM) -0.3 -0.2 +0.7 -0.2 -0.4
pH pH 6 -0.3 +0.3 +0.5 -0.5 +0.4
carbon source L-Leucine (C) +0.4 -0.1 +0.7 -0.2 -0.4
carbon source Lignin Monomers (C) -0.2 +0.2 -0.1 +0.1 +1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.1 +0.3 +0.4 +1.1 -0.1
carbon source Delta-Decalactone (C) +1.0 +0.1 +0.1 +0.5 -0.1
nitrogen source D-2-Aminobutyric (N) +0.7 +0.2 +0.2 -0.2 +0.7
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