Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4970 and PP_4971 are separated by 83 nucleotidesPP_4971 and PP_4972 are separated by 50 nucleotidesPP_4972 and PP_4973 are separated by 28 nucleotidesPP_4973 and PP_4974 are separated by 282 nucleotides PP_4970: PP_4970 - putative Cytochrome c', at 5,662,676 to 5,663,143 _4970 PP_4971: PP_4971 - putative Outer membrane-bound lytic murein transglycolase A, at 5,663,227 to 5,664,405 _4971 PP_4972: PP_4972 - conserved exported protein of unknown function, at 5,664,456 to 5,664,842 _4972 PP_4973: PP_4973 - conserved membrane protein of unknown function, at 5,664,871 to 5,665,704 _4973 PP_4974: PP_4974 - NhaP-type Na+/H+ and K+/H+ antiporters, at 5,665,987 to 5,667,222 _4974
Group Condition PP_4970 PP_4971 PP_4972 PP_4973 PP_4974
phage P. putida South MOI 1 N.D. -2.0 +0.0 -0.2 -0.2
phage P. putida PUT10 MOI 1 N.D. -1.7 -0.1 -0.2 -0.0
phage P. putida PUT10 MOI 10 N.D. -1.6 -0.1 +0.1 -0.3
phage P. putida PUT10 MOI 10 N.D. -1.7 -0.2 -0.0 -0.0
phage P. putida PUT10 MOI 0.1 N.D. -1.3 +0.0 -0.3 -0.2
phage P. putida PUT10 MOI 1 N.D. -1.3 -0.1 -0.1 -0.2
phage PUT 8 MOI 1 N.D. -1.3 -0.0 -0.2 -0.2
phage P. put PUT 10 MOI 10 N.D. -1.6 +0.0 +0.2 -0.3
phage PUT8 MOI 0.1 N.D. -1.4 -0.0 +0.1 -0.2
phage P. put South MOI 0.1 N.D. -1.3 -0.2 -0.1 -0.0
phage P. putida PUT10 MOI 0.1 N.D. -1.4 +0.1 -0.0 -0.2
phage P. put PUT 10 MOI 0.1 N.D. -1.0 -0.0 -0.4 -0.1
phage P. put South MOI 1 N.D. -1.6 +0.0 -0.2 +0.3
phage P. putida South MOI 0.1 N.D. -1.4 +0.0 -0.1 +0.1
phage PUT8 MOI 0.1 N.D. -1.7 +0.0 +0.2 -0.0
phage P. putida South MOI 0.1 N.D. -1.3 -0.0 -0.1 +0.0
carbon source D-Glucose (C) N.D. -0.0 +0.1 +0.2 -1.4
phage P. put South MOI 0.1 N.D. -1.1 -0.1 -0.1 +0.2
phage P. put PUT 10 MOI 1 N.D. -1.2 -0.0 -0.1 +0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM N.D. -1.2 +0.1 -0.3 +0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM N.D. -1.3 +0.1 +0.0 +0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM N.D. -0.9 -0.1 +0.5 -0.3
carbon source 3-Hydroxydecanoic (C) N.D. -0.9 +0.0 -0.3 +0.4
nitrogen source NAG (N); with MOPS N.D. +0.4 -0.1 -1.0 +0.0
pH pH 6 N.D. -0.3 +0.3 +0.5 -0.5
carbon source 2,3-Butanediol (C) N.D. +1.0 -0.2 +0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.3 +0.4 +0.5 +0.5
biofilm mediium pdms biofilm mediium PDMS; 7 hours N.D. +0.5 -0.0 +0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.1 +0.3 +0.4 +1.1
carbon source Delta-Decalactone (C) N.D. +1.0 +0.1 +0.1 +0.5
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