Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4957 and PP_4958 are separated by 12 nucleotidesPP_4958 and PP_4959 are separated by 0 nucleotidesPP_4959 and PP_4960 are separated by 212 nucleotidesPP_4960 and PP_4961 are separated by 100 nucleotides PP_4957: PP_4957 - conserved protein of unknown function, at 5,648,217 to 5,648,513 _4957 PP_4958: PP_4958 - putative metal-dependent hydrolase, at 5,648,526 to 5,649,065 _4958 PP_4959: PP_4959 - diguanylate cyclase, at 5,649,066 to 5,651,192 _4959 PP_4960: PP_4960 - Fructose-bisphosphate aldolase, at 5,651,405 to 5,652,469 _4960 PP_4961: PP_4961 - putative Lipoprotein, at 5,652,570 to 5,652,899 _4961
Group Condition PP_4957 PP_4958 PP_4959 PP_4960 PP_4961
nitrogen source Ammonium chloride (N) -0.0 +0.2 +0.0 N.D. -4.4
nitrogen source D-2-Aminobutyric (N) -1.5 +0.2 -0.1 N.D. -2.5
carbon source Valerolactone (C) -0.6 -0.0 -0.3 N.D. -2.8
phage P. putida PUT 7 MOI 1 -2.1 -0.4 -0.6 N.D. -0.3
nitrogen source Putrescine (N) -0.0 +0.2 +0.1 N.D. -3.0
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.5 -0.0 -0.4 N.D. -2.6
nitrogen source nitrogen source nitrite 0.5mM +0.2 -0.2 +0.2 N.D. -2.6
carbon source 3-methyl-1-butanol (C) -0.0 +0.2 +0.5 N.D. -2.9
nitrogen source nitrate (N) -0.9 -0.3 +0.5 N.D. -1.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.6 +0.2 +0.1 N.D. -1.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 +0.2 +0.3 N.D. -2.9
carbon source carbon source D-Glucose 55.5 mM +0.0 +0.4 +0.3 N.D. -2.7
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.5 +0.3 -0.0 N.D. -2.6
carbon source carbon source 3-O-methyl-glucose 50 mM -0.2 +0.3 +0.3 N.D. -2.1
temperature Growth at 30C; with MOPS +0.6 -0.3 +0.3 N.D. -2.1
temperature shift Temperature shift 30_to_34; with MOPS +0.6 +0.1 +0.1 N.D. -2.2
carbon source carbon source 4-vinylphenol 0.01 mM -0.1 +0.4 +0.3 N.D. -1.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.6 +0.1 -0.1 N.D. -1.7
temperature shift Temperature shift 30_to_21 +0.8 -0.1 +0.2 N.D. -2.0
carbon source 3-methyl-1-butanol (C) +0.4 +0.2 +0.3 N.D. -1.9
temperature shift Temperature shift 30_to_25; with MOPS -0.5 +0.2 +0.6 N.D. -1.3
carbon source Trisodium citrate (C) -1.5 +0.2 +0.7 N.D. -0.2
carbon source Tween 20 (C) -0.7 +0.1 +0.8 N.D. -0.9
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.7 +0.1 +0.4 N.D. -1.5
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -0.2 +0.3 +1.0 N.D. -1.1
temperature shift Temperature shift 10_to_30 +0.1 +0.1 +1.4 N.D. -1.1
nitrogen source DL-2-Aminobutyric (N) -0.1 +0.6 +1.6 N.D. +0.6
nitrogen source DL-2-Aminobutyric (N) +0.5 +0.3 +1.6 N.D. +0.1
temperature shift Temperature shift 10_to_30 +0.7 +0.3 +1.1 N.D. +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.1 +0.3 +1.0 N.D. +1.5
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