Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4955	PP_4956	PP_4957	PP_4958	PP_4959
phage	P. putida PUT 7 MOI 1	-0.3	-0.3	-2.1	-0.4	-0.6
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.2	-1.5	+0.2	-0.1
carbon source	acetate (C)	-0.1	+0.3	-0.8	+0.1	-0.7
carbon source	D-Glucose (C); with MOPS	+0.2	+0.2	-1.3	-0.4	+0.1
stress	Geraniol 1 vol%	+0.5	-0.4	-0.6	-0.2	-0.3
no stress control	Growth with no stress	+0.1	-0.5	-0.9	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.2	-1.1	+0.2	+0.4
temperature shift	Temperature shift 30_to_25	+0.2	+0.0	-1.2	-0.1	+0.7
carbon source	Trisodium citrate (C)	+0.3	+0.2	-1.5	+0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.6	-0.4	-0.0	-0.5
nitrogen source	2,6-diaminopimelic (N)	+0.4	+0.6	-0.8	+0.1	-0.2
carbon source	Tween 20 (C)	+0.3	-0.2	-0.7	+0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.3	-0.8	+0.2	-0.2
temperature	Growth at 30C; with MOPS	-0.5	+0.5	+0.6	-0.3	+0.3
temperature shift	Temperature shift 10_to_30	-0.0	-0.1	-0.6	+0.2	+1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.2	+0.2	+0.6	-0.1	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.1	+0.1	+1.1	-0.2	+0.5
temperature shift	Temperature shift 10_to_30; with MOPS	-0.0	-0.1	+0.5	-0.1	+1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	-0.2	+1.0	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.4	+1.3	+0.4	-0.1
temperature shift	Temperature shift 10_to_30; with MOPS	+0.0	+0.2	-0.2	+0.4	+1.3
nitrogen source	L-Leucine (N)	-0.1	+0.0	+0.1	+0.3	+1.5
carbon source	benzoic (C)	+0.1	+0.1	+0.7	+0.4	+0.7
carbon source	a-Ketoglutaric (C)	+0.0	+0.2	+0.5	+0.2	+0.9
temperature	Growth at 30C	+0.2	-0.0	+1.1	+0.2	+0.5
nitrogen source	DL-2-Aminobutyric (N)	-0.0	-0.0	-0.1	+0.6	+1.6
temperature shift	Temperature shift 10_to_25	+0.2	+0.2	+0.8	+0.1	+0.7
temperature shift	Temperature shift 10_to_30; with MOPS	-0.0	+0.2	+0.4	+0.1	+1.4
temperature shift	Temperature shift 10_to_30	+0.0	+0.1	+0.7	+0.3	+1.1
nitrogen source	DL-2-Aminobutyric (N)	+0.0	-0.1	+0.5	+0.3	+1.6