Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5718 and PP_4948 are separated by 142 nucleotidesPP_4948 and PP_4949 are separated by 31 nucleotidesPP_4949 and PP_4950 overlap by 1 nucleotidesPP_4950 and PP_4951 are separated by 109 nucleotides PP_5718: PP_5718 - conserved membrane protein of unknown function, at 5,634,807 to 5,635,490 _5718 PP_4948: PP_4948 - Acyl-CoA dehydrogenase family protein, at 5,635,633 to 5,637,435 _4948 PP_4949: PP_4949 - putative peptidase, TldD/PmbA family, at 5,637,467 to 5,638,909 _4949 PP_4950: PP_4950 - conserved protein of unknown function, at 5,638,909 to 5,640,228 _4950 PP_4951: PP_4951 - Drug resistance transporter, EmrB/QacA family, at 5,640,338 to 5,641,765 _4951
Group Condition PP_5718 PP_4948 PP_4949 PP_4950 PP_4951
carbon source Delta-Nonalactone (C) -0.7 -3.2 -0.3 -0.2 -0.4
carbon source Delta-Decalactone (C) -0.9 -2.8 -0.2 -0.4 -0.3
carbon source Delta-Decalactone (C) -0.7 -3.0 -0.2 -0.2 -0.2
carbon source Delta-Undecalactone (C) -0.1 -2.1 -0.1 -0.1 -0.2
carbon source Delta-Undecalactone (C) -0.4 -2.0 +0.0 +0.1 +0.1
temperature shift Temperature shift 30_to_21; with MOPS -0.1 -0.0 -0.6 -0.2 -0.5
phage P. putida Sci small MOI 0.1 +0.0 -0.3 -0.4 -0.7 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -0.0 -0.4 -0.1 -0.6
carbon source 5-Hydroxydodecanoate (C) -0.2 -0.4 -0.8 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.4 -0.1 -0.1 +0.3
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.0 +0.5 +0.1 +0.4 -1.6
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM +0.3 +0.3 -0.1 +0.2 -1.3
carbon source ferulate (C); with MOPS -0.8 +0.2 -0.3 -0.0 +0.3
phage P. putida Sci Big MOI 0.1 -0.4 +0.1 -0.1 -0.4 +0.3
carbon source D-Glucose (C); with MOPS -0.4 +0.3 -0.5 +0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.1 -0.6 +0.5 +0.1
nitrogen source 2,6-diaminopimelic (N) +0.1 +0.6 -0.3 -0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.6 -0.5 -0.0 +0.3
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL +0.1 +0.4 -0.2 +0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -0.3 -0.1 -0.2 +0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 -0.3 +0.4 +0.2 -0.4
pH Growth at pH7 and (C) D-Glucose +0.3 +0.2 +0.1 +0.3 -0.6
pH Growth at pH8 and (C) D-Glucose +0.2 -0.4 -0.0 -0.1 +0.6
carbon source acetate (C) -0.4 +0.0 -0.1 +0.3 +0.8
carbon source 1,3-Butandiol (C) +0.4 +0.2 +0.5 -0.3 +0.0
carbon source 2,3-Butanediol (C) -0.2 +0.3 +0.5 +0.4 +0.0
pH pH 6 +0.5 -0.1 +0.4 -0.0 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 -0.1 +0.4 +0.0 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.1 +0.3 -0.1 +1.7
nitrogen source NAG (N); with MOPS +0.4 +0.6 -0.2 +0.6 +0.6
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