Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4943 and PP_4944 overlap by 17 nucleotidesPP_4944 and PP_4945 are separated by 192 nucleotidesPP_4945 and PP_4946 are separated by 106 nucleotidesPP_4946 and PP_4947 are separated by 205 nucleotides PP_4943: PP_4943 - putative Glycosyl transferase, at 5,624,630 to 5,625,760 _4943 PP_4944: PP_4944 - Carbamoyltransferase, at 5,625,744 to 5,627,501 _4944 PP_4945: PP_4945 - 23S rRNA m(6)A2030 methyltransferase, at 5,627,694 to 5,628,530 _4945 PP_4946: PP_4946 - sodium/L-proline transporter, at 5,628,637 to 5,630,265 _4946 PP_4947: PP_4947 - proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase, at 5,630,471 to 5,634,424 _4947
Group Condition PP_4943 PP_4944 PP_4945 PP_4946 PP_4947
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.8 -4.0 +0.0 -0.3 -0.6
nitrogen source L-Proline (N) -2.9 -0.9 -0.1 -0.5 -5.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -5.4 -2.2 -0.2 -0.1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.7 -2.2 +0.0 -0.1 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.6 -1.8 -0.1 +0.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.7 -2.2 -0.1 +0.0 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -4.1 -2.8 +0.1 -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -4.7 -2.4 +0.1 +0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -5.3 -1.3 -0.0 -0.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -4.1 -2.8 +0.4 -0.0 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.8 -3.4 +0.6 -0.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.6 -2.8 +0.5 +0.0 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -3.0 -3.4 +0.1 +0.2 -0.3
nitrogen source L-Proline (N) +0.5 -1.0 -0.2 -0.4 -5.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -4.0 -1.9 -0.2 +0.7 -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -4.8 +1.1 +0.1 +0.5 -0.8
pH Growth at pH7 and (C) D-Glucose -5.0 +0.9 +0.3 +0.6 +0.4
stress Growth with Chloride 500 mM -5.1 +2.0 +0.2 +0.6 +0.5
phage PUT8 MOI 0.1 +2.4 -5.0 +0.2 +0.9 +0.3
stress Growth with Chloride 500 mM; with MOPS -5.1 +2.7 +0.4 +1.0 +0.6
stress Growth with Chloride 500 mM; with MOPS -4.3 +3.0 +0.5 +1.4 +0.4
stress Growth with Chloride 500 mM; with MOPS -2.0 +2.7 +0.5 +1.3 +0.5
stress Growth with Chloride 500 mM; with MOPS -2.0 +3.0 +0.4 +1.3 +0.5
phage P. putida PUT 7 MOI 1 +5.4 +2.6 +0.2 -0.2 -0.2
carbon source L-Alanine (C) -0.5 +0.3 +0.1 -0.2 +8.4
phage P. putida Sci small MOI 0.1 +5.2 +3.3 +0.2 +0.2 -0.5
carbon source Delta-Nonalactone (C) +5.9 +0.8 +0.3 +0.8 +0.8
phage P. putida Sci small MOI 0.1 +6.7 +3.2 -0.5 +0.3 +0.1
phage P. putida Missley MOI 0.1 +5.7 +4.9 +0.3 -0.2 +0.0
phage P. putida Sci Big MOI 0.1 +8.4 +5.5 -0.0 -0.3 +0.1
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