Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4941 and PP_4942 overlap by 4 nucleotidesPP_4942 and PP_4943 overlap by 1 nucleotidesPP_4943 and PP_4944 overlap by 17 nucleotidesPP_4944 and PP_4945 are separated by 192 nucleotides PP_4941: PP_4941 - conserved exported protein of unknown function, at 5,622,334 to 5,623,737 _4941 PP_4942: PP_4942 - conserved protein of unknown function, at 5,623,734 to 5,624,630 _4942 PP_4943: PP_4943 - putative Glycosyl transferase, at 5,624,630 to 5,625,760 _4943 PP_4944: PP_4944 - Carbamoyltransferase, at 5,625,744 to 5,627,501 _4944 PP_4945: PP_4945 - 23S rRNA m(6)A2030 methyltransferase, at 5,627,694 to 5,628,530 _4945
Group Condition PP_4941 PP_4942 PP_4943 PP_4944 PP_4945
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.1 -3.6 -5.6 -1.8 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.7 -2.3 -5.7 -2.2 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.8 -2.0 -4.8 -4.0 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.4 -2.9 -3.8 -3.4 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.0 -2.4 -4.7 -2.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.7 -1.1 -5.4 -2.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.6 -2.6 -5.0 -1.0 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -3.1 -1.4 -4.1 -2.8 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.3 -3.0 -4.0 -1.0 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.6 -3.2 -3.6 -1.8 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -2.5 -1.2 -4.7 -2.4 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.0 -2.0 -4.3 -1.9 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.9 -3.0 -3.3 -1.9 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -2.7 -1.3 -3.0 -3.4 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.4 -1.8 -3.4 -2.3 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.1 -1.7 -5.2 -0.7 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.6 -1.4 -5.3 -1.3 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.6 -1.9 -3.7 -2.5 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.2 -1.8 -3.3 -2.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.3 -1.0 -3.6 -2.8 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.1 -0.2 -4.1 -2.8 +0.4
phage FRSphage -2.9 -2.0 +0.7 -4.0 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.1 -0.8 -4.8 +1.1 +0.1
stress Growth with Chloride 500 mM; with MOPS +2.3 +1.7 -5.1 +2.7 +0.4
stress Growth with Chloride 500 mM; with MOPS +1.9 +1.9 -4.3 +3.0 +0.5
phage P. putida Sci small MOI 0.1 +3.5 -0.1 +5.2 +3.3 +0.2
phage P. putida PUT 7 MOI 1 +2.7 +3.0 +5.4 +2.6 +0.2
phage P. putida Sci small MOI 0.1 +2.9 +3.2 +6.7 +3.2 -0.5
phage P. putida Missley MOI 0.1 +4.0 +3.5 +5.7 +4.9 +0.3
phage P. putida Sci Big MOI 0.1 +3.7 +5.1 +8.4 +5.5 -0.0
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