Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4931 and PP_4932 overlap by 4 nucleotidesPP_4932 and PP_4933 are separated by 58 nucleotidesPP_4933 and PP_4934 are separated by 81 nucleotidesPP_4934 and PP_4935 are separated by 130 nucleotides PP_4931: PP_4931 - conserved protein of unknown function, at 5,611,007 to 5,612,182 _4931 PP_4932: PP_4932 - putative D-arabinose 1-dehydrogenase, at 5,612,179 to 5,612,991 _4932 PP_4933: PP_4933 - conserved protein of unknown function, at 5,613,050 to 5,614,018 _4933 PP_4934: PP_4934 - heptose 7-phosphate kinase/heptose 1-phosphate adenylyltransferase, at 5,614,100 to 5,615,521 _4934 PP_4935: PP_4935 - Lipid A export ATP-binding/permease protein MsbA, at 5,615,652 to 5,617,460 _4935
Group Condition PP_4931 PP_4932 PP_4933 PP_4934 PP_4935
pH Growth at pH6 and (C) D-Glucose N.D. N.D. -0.7 N.D. N.D.
carbon source L-Alanine (C) N.D. N.D. -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.6 N.D. N.D.
temperature shift Temperature shift 30_to_25 N.D. N.D. -0.6 N.D. N.D.
phage P. putida Sci Big MOI 0.1 N.D. N.D. -0.6 N.D. N.D.
carbon source L-Leucine (C) N.D. N.D. -0.6 N.D. N.D.
pH pH 5 N.D. N.D. -0.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.5 N.D. N.D.
carbon source L-Isoleucine (C) N.D. N.D. -0.5 N.D. N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM N.D. N.D. -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.5 N.D. N.D.
nitrogen source NAG (N); with MOPS N.D. N.D. +0.5 N.D. N.D.
carbon source Hexanoic (C) N.D. N.D. +0.5 N.D. N.D.
nitrogen source 2,6-diaminopimelic (N) N.D. N.D. +0.5 N.D. N.D.
nitrogen source L-Methionine (N) N.D. N.D. +0.5 N.D. N.D.
carbon source Acetate Carbon Source (5mM) N.D. N.D. +0.5 N.D. N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. N.D. +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.6 N.D. N.D.
nitrogen source 6-aminocaproic (N) N.D. N.D. +0.6 N.D. N.D.
nitrogen source L-Methionine (N) N.D. N.D. +0.6 N.D. N.D.
carbon source 3-methyl-2-oxopentanoic (C) N.D. N.D. +0.6 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) N.D. N.D. +0.6 N.D. N.D.
nitrogen source D-2-Aminobutyric (N) N.D. N.D. +0.7 N.D. N.D.
pH Growth at pH7 and (C) D-Glucose N.D. N.D. +0.7 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. +0.7 N.D. N.D.
carbon source Delta-Decalactone (C) N.D. N.D. +0.7 N.D. N.D.
nitrogen source 2,6-diaminopimelic (N) N.D. N.D. +0.9 N.D. N.D.
carbon source Delta-Nonalactone (C) N.D. N.D. +1.7 N.D. N.D.
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