Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4898	PP_4899	PP_4900	PP_4901	PP_4902
stress	R2A with Fusaric 480 ug/mL	N.D.	+0.3	-0.5	+0.2	-7.6
micoeukaryotes	C.elegans, mixed culture-2	N.D.	-0.0	-1.4	-0.2	-5.9
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	-0.6	-0.8	+0.1	-5.8
micoeukaryotes	Tetrahymena sp., Mixed culture-1	N.D.	+0.0	-0.8	-0.1	-6.2
nitrogen source	nitrogen source nitrite 0.5mM	N.D.	-0.5	+0.1	+0.2	-5.6
micoeukaryotes	C.elegans, mixed culture-1	N.D.	-0.3	-1.3	-0.2	-3.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	N.D.	+0.2	-1.8	-0.4	-3.7
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	N.D.	+0.5	+0.1	-0.4	-5.8
stress	R2A with Fusaric 480 ug/mL	N.D.	-0.0	-0.3	+0.1	-5.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+0.1	-0.1	+0.1	-5.5
carbon source	M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB	N.D.	-0.0	-0.1	-0.0	-5.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	+0.3	-0.1	+0.2	-5.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	-0.0	-0.4	+0.3	-5.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	+0.2	-0.3	+0.2	-5.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+0.2	-0.4	-0.0	-4.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	N.D.	-0.1	-0.2	+0.3	-5.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+0.0	-0.4	+0.2	-4.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	N.D.	+0.2	-0.1	+0.1	-5.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.3	+0.5	+0.0	-5.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	+0.1	-0.4	+0.4	-4.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.2	+0.5	-0.1	-4.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	+0.2	-0.6	+0.4	-4.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	+0.5	-0.9	+0.8	-4.9
pH	Growth at pH9 and (C) Trisodium citrate	N.D.	+0.4	+0.0	-0.7	-4.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	+0.1	-0.3	+0.5	-4.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	-0.0	-0.2	+0.7	-4.9
biofilm mediium pdms	biofilm mediium PDMS; 7 hours	N.D.	+0.2	+0.1	+0.4	-4.8
phage	P. put South MOI 10	N.D.	+0.3	+0.4	+0.2	-4.9
phage	PUT8 MOI 0.1	N.D.	+0.5	+0.6	-0.2	-4.4
nitrogen source	DL-2-Aminobutyric (N)	N.D.	+0.4	-0.9	+0.0	+4.1