Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4893 and PP_4894 are separated by 12 nucleotidesPP_4894 and PP_4895 are separated by 94 nucleotidesPP_4895 and PP_4896 are separated by 1 nucleotidesPP_4896 and PP_4897 overlap by 1 nucleotides PP_4893: PP_4893 - GTPase HflX, at 5,562,945 to 5,564,246 _4893 PP_4894: PP_4894 - RNA-binding protein Hfq, at 5,564,259 to 5,564,519 _4894 PP_4895: PP_4895 - tRNA dimethylallyltransferase, at 5,564,614 to 5,565,585 _4895 PP_4896: PP_4896 - DNA mismatch repair protein MutL, at 5,565,587 to 5,567,485 _4896 PP_4897: PP_4897 - N-acetylmuramoyl-L-alanine amidase, at 5,567,485 to 5,568,915 _4897
Group Condition PP_4893 PP_4894 PP_4895 PP_4896 PP_4897
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.0 N.D. -2.1 -1.6 -1.7
phage PUT 8 MOI 1 -0.4 N.D. -2.6 -1.4 -1.4
nitrogen source DL-2-Aminobutyric (N) -1.2 N.D. -1.4 -1.4 -1.9
stress R2A with Fusaric 480 ug/mL -0.5 N.D. -4.2 -0.5 -0.6
stress R2A with Fusaric 480 ug/mL +0.1 N.D. -4.3 -0.8 -0.7
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.5 N.D. -4.4 -0.2 -0.4
nitrogen source DL-2-Aminobutyric (N) -1.1 N.D. -1.1 -1.5 -1.8
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.3 N.D. -3.2 -0.6 -0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.5 N.D. -3.1 -0.5 -1.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.2 N.D. -3.0 -1.1 -1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 N.D. -3.2 -0.1 -1.8
phage PUT8 MOI 0.1 +0.3 N.D. -2.6 -0.8 -1.4
phage PUT8 MOI 0.1 +0.1 N.D. -2.6 -0.6 -1.3
stress R2A with Fusaric 480 ug/mL -0.5 N.D. -3.3 -0.3 -0.4
nitrogen source Beta-alanine (N) -0.2 N.D. -2.1 -1.0 -1.1
phage P. put South MOI 10 -0.1 N.D. -2.6 -0.9 -0.7
phage P. put PUT 10 MOI 10 +0.4 N.D. -2.6 -0.7 -1.0
phage P. put South MOI 1 +0.3 N.D. -2.8 -0.8 -0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.7 N.D. -2.7 -0.3 -1.6
phage P. put South MOI 0.1 +0.3 N.D. -2.6 -1.0 -0.5
phage P. putida PUT10 MOI 10 +0.3 N.D. -2.5 -0.5 -1.0
phage P. put PUT 10 MOI 10 +0.4 N.D. -2.7 -0.7 -0.7
phage P. putida South MOI 0.1 +0.5 N.D. -2.6 -0.5 -0.9
micoeukaryotes C.elegans, mixed culture-1 -0.9 N.D. -3.4 +0.1 +0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.8 N.D. -2.5 -0.1 -1.3
carbon source 3-methyl-1-butanol (C) +0.5 N.D. -3.0 -0.5 +0.3
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.1 N.D. +2.1 +0.5 -1.7
carbon source L-Leucine (C) +0.6 N.D. +2.4 +0.8 -0.5
carbon source L-Leucine (C) +0.7 N.D. +2.1 +0.7 +1.0
carbon source L-Alanine (C) +0.3 N.D. +3.7 +1.4 +0.6
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