Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4888 and PP_4889 are separated by 330 nucleotidesPP_4889 and PP_4890 are separated by 56 nucleotidesPP_4890 and PP_4891 are separated by 301 nucleotidesPP_4891 and PP_4892 overlap by 1 nucleotides PP_4888: PP_4888 - putative methyl-accepting chemotaxis transducer, at 5,555,695 to 5,557,629 _4888 PP_4889: PP_4889 - Adenylosuccinate synthetase, at 5,557,960 to 5,559,252 _4889 PP_4890: PP_4890 - ATP phosphoribosyltransferase regulatory subunit, at 5,559,309 to 5,560,496 _4890 PP_4891: PP_4891 - integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex, at 5,560,798 to 5,561,667 _4891 PP_4892: PP_4892 - integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex, at 5,561,667 to 5,562,884 _4892
Group Condition PP_4888 PP_4889 PP_4890 PP_4891 PP_4892
carbon source L-Glutamic (C) +0.1 N.D. -7.3 -3.1 -3.5
carbon source L-Glutamic (C) +0.1 N.D. -8.2 -2.3 -1.9
carbon source D-Galacturonic Acid (C) +0.1 N.D. -6.6 -3.3 -2.5
nitrogen source spermidine (N) -0.0 N.D. -5.4 -4.0 -2.8
nitrogen source spermidine (N) -0.0 N.D. -6.0 -3.2 -2.5
nitrogen source Propandiamine (N) -0.0 N.D. -7.2 -2.3 -1.2
carbon source M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB +0.1 N.D. -7.2 -1.3 -2.0
nitrogen source Propandiamine (N) -0.0 N.D. -4.5 -3.2 -2.4
carbon source D-Glucuronic gamma lactone (C) +0.1 N.D. -5.2 -2.5 -2.5
carbon source D-Galacturonic Acid (C) +0.2 N.D. -4.7 -2.7 -2.5
carbon source L-Lysine (C) +0.0 N.D. -8.1 -0.8 -0.5
carbon source M9 minimal media_noCarbon with Trisodium citrate 10 mM; 30C; then outgrowth in LB +0.1 N.D. -6.7 -1.6 -1.2
carbon source D-Glucuronic gamma lactone (C) +0.1 N.D. -5.3 -2.4 -1.6
nitrogen source L-pyroglutamic (N) -0.2 N.D. -3.7 -3.2 -2.0
carbon source Protocatechuic Acid (C) -0.1 N.D. -8.0 -0.5 -0.4
carbon source L-Glutamic (C) -0.3 N.D. -3.7 -2.8 -2.2
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB +0.0 N.D. -5.7 -1.9 -1.3
carbon source Beta-alanine (C) +0.1 N.D. -7.1 -1.0 -1.0
carbon source Delta-Undecalactone (C) -0.0 N.D. -8.0 -0.4 -0.5
carbon source p-Coumaric (C) -0.1 N.D. -8.1 -0.3 -0.0
carbon source Mucic (C) +0.0 N.D. -6.4 -1.7 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.2 N.D. -4.5 -2.4 -1.7
carbon source Delta-Undecalactone (C) -0.1 N.D. -8.2 +0.2 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 N.D. -3.9 -3.0 -1.4
carbon source Vanillic Acid (C) +0.0 N.D. -7.5 +0.4 -0.7
stress Growth with Chloride 200 mM; with MOPS -0.3 N.D. -7.8 +0.5 -0.2
nitrogen source nitrogen source Ammonium chloride 20mM -0.1 N.D. -7.9 +0.3 +0.4
stress Growth with Chloride 500 mM; with MOPS -0.2 N.D. -5.6 +1.6 +1.9
stress Growth with Chloride 500 mM; with MOPS -0.2 N.D. -4.5 +1.8 +2.0
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.1 N.D. -5.3 +2.5 +2.5
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