Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4876 and PP_4877 are separated by 28 nucleotidesPP_4877 and PP_4879 are separated by 876 nucleotidesPP_4879 and PP_4880 overlap by 4 nucleotidesPP_4880 and PP_t46 are separated by 272 nucleotides PP_4876: PP_4876 - 30S ribosomal protein S18, at 5,544,176 to 5,544,406 _4876 PP_4877: PP_4877 - 30S ribosomal protein S6, at 5,544,435 to 5,544,860 _4877 PP_4879: PP_4879 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 5,545,737 to 5,546,483 _4879 PP_4880: PP_4880 - exoribonuclease R, at 5,546,480 to 5,549,053 _4880 PP_t46: PP_t46 - tRNA-Leu, at 5,549,326 to 5,549,412 _t46
Group Condition PP_4876 PP_4877 PP_4879 PP_4880 PP_t46
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. N.D. -1.2 -3.7 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -1.6 -2.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -1.1 -3.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -0.6 -3.4 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 N.D. N.D. -0.9 -3.1 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. N.D. -1.1 -2.9 N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. -0.8 -3.0 N.D.
temperature Growth at 10C N.D. N.D. -0.5 -3.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -0.9 -2.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -1.4 -2.1 N.D.
temperature shift Temperature shift 30_to_10; with MOPS N.D. N.D. -0.7 -2.7 N.D.
temperature Growth at 10C; with MOPS N.D. N.D. -0.9 -2.4 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. N.D. -0.8 -2.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. -1.0 -2.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. -0.2 -3.0 N.D.
micoeukaryotes C.elegans, mixed culture-1 N.D. N.D. -0.6 -2.6 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. N.D. -0.4 -2.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -0.9 -2.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -0.8 -2.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.2 -1.9 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs N.D. N.D. -0.4 -2.8 N.D.
temperature Growth at 10C N.D. N.D. +0.0 -3.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs N.D. N.D. -0.6 -2.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. N.D. +0.0 -3.1 N.D.
temperature Growth at 10C; with MOPS N.D. N.D. +0.1 -3.1 N.D.
temperature Growth at 10C N.D. N.D. +0.3 -3.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. +0.4 -3.3 N.D.
temperature Growth at 10C; with MOPS N.D. N.D. +0.3 -3.0 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. N.D. +0.6 -2.4 N.D.
carbon source Lignin Monomers (C) N.D. N.D. -1.3 +2.4 N.D.
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