Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4872 and PP_4873 are separated by 315 nucleotidesPP_4873 and PP_4874 are separated by 113 nucleotidesPP_4874 and PP_4875 are separated by 20 nucleotidesPP_4875 and PP_4876 are separated by 33 nucleotides PP_4872: PP_4872 - putative enzyme of unknown function, at 5,538,631 to 5,540,985 _4872 PP_4873: PP_4873 - replicative DNA helicase (ATPase), at 5,541,301 to 5,542,698 _4873 PP_4874: PP_4874 - 50S ribosomal protein L9, at 5,542,812 to 5,543,258 _4874 PP_4875: PP_4875 - conserved membrane protein of unknown function, at 5,543,279 to 5,544,142 _4875 PP_4876: PP_4876 - 30S ribosomal protein S18, at 5,544,176 to 5,544,406 _4876
Group Condition PP_4872 PP_4873 PP_4874 PP_4875 PP_4876
phage P. putida South MOI 0.1 -0.5 N.D. -5.7 -1.0 N.D.
phage PUT 8 MOI 1 -0.5 N.D. -5.0 -1.6 N.D.
phage P. put PUT 10 MOI 1 -0.6 N.D. -5.5 -0.8 N.D.
phage P. put South MOI 1 -0.3 N.D. -5.4 -1.0 N.D.
phage P. putida PUT10 MOI 0.1 -0.6 N.D. -5.5 -0.6 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.3 N.D. -5.5 -1.6 N.D.
phage PUT8 MOI 0.1 -0.4 N.D. -4.9 -1.3 N.D.
phage P. putida South MOI 10 -0.4 N.D. -5.3 -0.9 N.D.
phage P. put PUT 10 MOI 0.1 -0.4 N.D. -5.3 -0.8 N.D.
phage P. putida South MOI 0.1 -0.4 N.D. -5.6 -0.4 N.D.
phage P. put South MOI 1 -0.3 N.D. -5.5 -0.6 N.D.
phage P. putida PUT10 MOI 10 -0.7 N.D. -5.6 -0.0 N.D.
phage P. putida PUT10 MOI 10 -0.5 N.D. -5.7 -0.2 N.D.
micoeukaryotes C.elegans, mixed culture-1 -0.4 N.D. -4.6 -1.2 N.D.
phage P. putida PUT10 MOI 1 -0.7 N.D. -4.6 -1.0 N.D.
phage P. put South MOI 0.1 -0.4 N.D. -5.3 -0.6 N.D.
phage P. put PUT 10 MOI 1 -0.3 N.D. -5.2 -0.6 N.D.
phage P. putida South MOI 10 -0.1 N.D. -5.3 -0.7 N.D.
phage P. put PUT 10 MOI 0.1 -0.3 N.D. -4.8 -1.1 N.D.
phage PUT8 MOI 10 -0.2 N.D. -5.1 -0.7 N.D.
phage P. put PUT 10 MOI 10 -0.4 N.D. -5.5 -0.1 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 N.D. -2.0 -3.7 N.D.
phage P. put South MOI 10 -0.2 N.D. -5.4 -0.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 -0.4 N.D. -4.6 -0.6 N.D.
phage P. putida PUT10 MOI 0.1 -0.5 N.D. -4.4 -0.7 N.D.
phage PUT8 MOI 0.1 -0.2 N.D. -5.0 -0.2 N.D.
phage P. put South MOI 0.1 -0.5 N.D. -4.0 -0.9 N.D.
phage PUT8 MOI 10 +0.1 N.D. -5.0 -0.3 N.D.
stress R2A with Fusaric 240 ug/mL +0.2 N.D. -5.5 +0.2 N.D.
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.0 N.D. +3.7 +1.4 N.D.
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