Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_4851 and PP_4852 are separated by 30 nucleotidesPP_4852 and PP_4853 are separated by 225 nucleotidesPP_4853 and PP_4854 are separated by 1 nucleotidesPP_4854 and PP_4855 are separated by 66 nucleotides PP_4851: PP_4851 - Phosphate starvation-inducible protein, PSIF, at 5,518,590 to 5,518,910 _4851 PP_4852: PP_4852 - Transcriptional regulator, AraC family, at 5,518,941 to 5,519,729 _4852 PP_4853: PP_4853 - putative permease of the drug/metabolite transporter (DMT) superfamily, at 5,519,955 to 5,520,836 _4853 PP_4854: PP_4854 - Lipase, at 5,520,838 to 5,521,785 _4854 PP_4855: PP_4855 - Osmotically-inducible lipoprotein OsmE, at 5,521,852 to 5,522,193 _4855
Group Condition PP_4851 PP_4852 PP_4853 PP_4854 PP_4855
pH Growth at pH6 and (C) D-Glucose N.D. +0.2 -0.4 -0.6 -0.6
pH Growth at pH6 and (C) D-Glucose N.D. +0.2 -0.3 -0.2 -0.9
carbon source carbon source 2-Deoxy-D-glucose 50 mM N.D. -0.4 -0.4 +0.2 -0.4
nitrogen source Propiolactam (N) N.D. -1.6 +0.8 -0.2 +0.1
phage P. putida Sci small MOI 0.1 N.D. -0.2 +0.2 -0.3 -0.6
carbon source carbon source 4-vinylphenol 0.1 mM N.D. -0.5 +0.1 +0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 -0.0 -0.1 -0.9
carbon source 1,3-Butandiol (C) N.D. +0.4 -0.5 -0.4 -0.3
pH pH 5 N.D. -0.1 +0.2 +0.0 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.0 -0.3 +0.2 -0.6
pH Growth at pH7 and (C) D-Glucose N.D. +0.2 -0.1 -0.3 -0.4
nitrogen source NAG (N); with MOPS N.D. -0.4 -0.1 -0.3 +0.5
nitrogen source D-2-Aminobutyric (N) N.D. +1.1 -0.4 -0.4 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.3 +0.1 +0.4 -0.3
nitrogen source Propiolactam (N) N.D. -1.2 +0.7 +0.0 +0.4
nitrogen source 2,6-diaminopimelic (N) N.D. -0.5 +0.2 -0.0 +0.3
nitrogen source D-2-Aminobutyric (N) N.D. +0.1 +0.3 +0.3 -0.5
pH Growth at pH8 and (C) Trisodium citrate N.D. +0.4 -0.3 -0.2 +0.3
stress Growth with Chloride 200 mM N.D. -0.2 +0.3 -0.3 +0.4
nitrogen source Urea (N); with MOPS N.D. -0.4 +0.1 +0.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +0.1 +0.3 +0.4 -0.4
micoeukaryotes Tetrahymena sp., Mixed culture-2 N.D. +0.3 -0.4 +0.6 -0.1
temperature shift Temperature shift 10_to_21; with MOPS N.D. -0.1 -0.1 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.3 +0.4 +0.2 +0.4
pH Valerolactone (C) pH 6.5 N.D. +0.2 -0.2 -0.2 +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +0.4 +0.5 +0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 +0.2 +0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 +0.5 -0.1 +0.1
carbon source DL-3-Hydroxyisobutyric (C) N.D. +0.3 +0.2 +0.1 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.0 +0.3 -0.2 +1.2
remove
PP_4851
plot		 remove
PP_4852
plot		 remove
PP_4853		 remove
PP_4854
plot		 remove
PP_4855
plot