Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4838	PP_4839	PP_4840	PP_4841	PP_4842
phage	P. putida Sci Big MOI 0.1	-0.2	-0.3	-0.7	-0.7	-0.0
phage	P. putida Sci small MOI 0.1	-0.5	-0.5	-0.0	-0.7	-0.1
carbon source	Delta-Nonalactone (C)	-0.0	+0.0	-1.5	-0.1	-0.1
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8	-0.2	+0.0	-0.2	-0.3
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.7	-0.4	-0.0	-0.1	-0.3
carbon source	Delta-Decalactone (C)	-0.2	-0.1	-0.8	-0.2	+0.1
phage	P. putida Sci small MOI 0.1	-0.6	+0.0	-0.7	+0.1	+0.2
nitrogen source	2,6-diaminopimelic (N)	-0.2	+0.2	+0.0	-0.8	-0.1
carbon source	Myristic (C)	-0.2	+0.1	-0.6	-0.4	+0.4
stress	R2A with Fusaric 480 ug/mL	-0.2	-1.0	+0.2	+0.1	+0.3
nitrogen source	Propandiamine (N)	+0.3	+0.0	+0.2	-0.8	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.1	+0.1	+0.1	+0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.1	+0.1	+0.3	+0.1	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	+0.2	+0.3	-0.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.5	-0.0	+0.3	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4	+0.2	-0.0	+0.3	-0.5
pH	pH 9	-0.2	+0.6	+0.3	+0.2	-0.2
phage	PUT 8 MOI 1	+0.4	+0.5	-0.3	+0.2	-0.0
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.2	+0.6	+0.3	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	-0.2	+0.3	+0.1
nitrogen source	DL-2-Aminobutyric (N)	+0.6	-0.0	+0.8	-0.2	-0.1
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.1	+0.4	+0.3	+0.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.3	+0.3	+0.2	+0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	+0.2	+0.3	+0.4	+0.3
nitrogen source	DL-2-Aminobutyric (N)	+0.7	+0.0	+1.0	-0.1	-0.2
nitrogen source	Beta-alanine (N)	+0.4	-0.2	+1.1	+0.0	+0.1
nitrogen source	Beta-alanine (N)	+0.3	-0.0	+1.1	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.7	+0.4	+0.4	+0.2
nitrogen source	D-2-Aminobutyric (N)	+0.3	+0.7	+1.7	+0.0	-0.0
nitrogen source	D-2-Aminobutyric (N)	+0.8	+0.1	+1.5	+0.4	+0.2