Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4834	PP_4835	PP_4836	PP_4837	PP_4838
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-3.2	-1.0	-2.6	-0.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.0	-1.0	-3.7	-1.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	-5.8	+0.2	-0.5	+0.2
stress	Geraniol 1 vol%	+0.3	-0.6	-2.4	-0.9	-0.7
carbon source	ferulate (C); with MOPS	-0.1	-0.6	+0.5	-4.1	+0.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.1	-0.8	-1.7	-0.9	-0.7
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.1	-1.0	-1.0	-1.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.4	-2.1	-0.2	-1.1
stress	R2A with Fusaric 480 ug/mL	-0.2	-1.0	-2.3	+0.0	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.2	-2.5	-0.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.1	-2.0	-0.5	-1.1
nitrogen source	nitrogen source nitrite 1mM	-0.2	-2.9	+0.2	-0.5	-0.0
nitrogen source	Propandiamine (N)	-0.2	-0.1	-0.6	-2.6	+0.3
pH	Growth at pH7 and (C) Trisodium citrate	-0.0	-0.9	+0.8	-3.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.4	-1.7	-0.1	-0.9
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.1	-2.0	-0.6	-0.3
supernatant	LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter	+0.2	-0.7	-1.4	-0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.5	+0.5	-2.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.2	-0.6	-1.8	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.4	-2.0	-0.3	-0.4
carbon source	1,3-Butandiol (C)	-0.1	-1.9	+0.9	-1.2	+0.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.0	-2.8	+1.3	-0.3	-0.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.1	+0.6	-1.6	-0.0	-0.8
temperature shift	Temperature shift 10_to_25; with MOPS	+0.2	-1.8	+0.5	-0.6	+0.2
carbon source	Valerolactone (C)	-0.3	+1.0	-0.2	-2.1	+0.1
pH	pH 5	+0.1	-1.9	+0.8	-0.4	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.0	+1.2	-2.1	-0.6	+0.1
carbon source	carbon source D-Glucose 55.5 mM	-0.0	-0.1	+1.6	-1.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+1.1	-0.7	-0.7	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.1	-1.1	+1.9	+0.0