Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4822	PP_4823	PP_4824	PP_4825	PP_5714
carbon source	ferulate (C); with MOPS	N.D.	N.D.	-1.4	-1.2	-1.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	N.D.	-0.9	-0.0	-3.0
carbon source	4-Hydroxyvalerate (C) (40mM)	N.D.	N.D.	-3.3	-0.1	-0.2
pH	Growth at pH6 and (C) D-Glucose	N.D.	N.D.	-2.8	-0.3	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	N.D.	-2.3	-0.5	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-2.7	+0.1	-0.4
carbon source	4-Hydroxyvalerate (C) (40mM)	N.D.	N.D.	-2.7	+0.0	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	N.D.	N.D.	-1.8	+0.4	-1.6
carbon source	D-Glucose (C)	N.D.	N.D.	-2.1	-0.1	-0.7
temperature shift	Temperature shift 30_to_25	N.D.	N.D.	-2.5	-0.1	-0.2
temperature shift	Temperature shift 30_to_21; with MOPS	N.D.	N.D.	-1.0	-0.5	-1.3
nitrogen source	NAG (N)	N.D.	N.D.	-2.2	-0.2	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-2.4	+0.3	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	N.D.	N.D.	-2.2	-0.1	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	N.D.	-1.8	-0.1	-0.8
stress	Growth with Chloride 200 mM	N.D.	N.D.	-1.5	-0.5	-0.7
pH	Growth at pH7 and (C) Trisodium citrate	N.D.	N.D.	-2.2	-0.1	-0.4
nitrogen source	Urea (N); with MOPS	N.D.	N.D.	-1.9	+0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	-2.4	+0.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-2.6	+0.1	+0.0
carbon source	D-Glucose (C); with MOPS	N.D.	N.D.	-2.3	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	-3.2	+0.3	+0.4
nitrogen source	nitrate (N)	N.D.	N.D.	-2.0	+0.2	-0.6
carbon source	ferulate (C); with MOPS	N.D.	N.D.	-2.4	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-2.3	-0.2	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	N.D.	-2.4	+0.3	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	N.D.	-2.2	-0.1	+0.4
nitrogen source	nitrite (N)	N.D.	N.D.	-2.3	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.9	-0.4	+1.1
nitrogen source	Propandiamine (N)	N.D.	N.D.	+2.9	-0.3	+0.3