Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_4816	PP_4817	PP_4818	PP_4819	PP_4820
carbon source	5-Hydroxydodecanoate (C)	-0.1	-5.6	-0.6	-0.2	+0.1
carbon source	Delta-Undecalactone (C)	+0.1	-6.5	-0.0	-0.1	+0.4
dilutelb	LB 0.1x with 55.5 mM D-Glucose	+0.2	-0.4	-1.9	-3.5	+0.1
carbon source	Delta-Dodecalactone (C)	-0.0	-5.1	-0.1	+0.4	+0.7
carbon source	5-Hydroxydodecanoate (C)	+0.1	-4.7	+0.4	+0.1	+0.2
carbon source	Delta-Undecalactone (C)	+0.0	-3.5	-0.0	-0.1	+0.1
supernatant	LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter	-0.1	-0.0	-0.7	-1.5	-0.7
carbon source	Delta-Dodecalactone (C)	+0.0	-4.1	+0.2	+0.2	+0.8
micoeukaryotes	C.elegans, mixed culture-1	+0.3	-0.6	-0.5	-1.2	-1.0
nitrogen source	nitrate (N)	+0.0	-0.1	-1.5	-0.7	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	+0.1	-1.6	-0.5	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8	-0.3	-0.6	+0.0	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.0	+0.2	+0.4	-1.5	-1.7
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	-0.2	-1.8	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-3.0	+0.6	+0.1	+0.1
carbon source	3-Hydroxydecanoic (C)	+0.5	-3.0	+0.4	-0.3	+0.1
carbon source	ferulate (C); with MOPS	+0.1	-1.8	-0.6	+0.2	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.1	+0.8	-2.5	-0.4	+0.1
carbon source	Delta-Decalactone (C)	-0.2	-2.5	+0.5	+0.3	-0.0
carbon source	3-Hydroxydecanoic (C)	+0.1	-2.3	+0.5	-0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.2	-0.9	-0.4	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6	+1.1	-0.5	-0.2	-0.6
pH	pH 9	+0.1	+1.0	-1.4	-0.1	-0.1
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	+0.2	+1.1	-1.0	-0.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7	+0.5	+1.3	+0.1	-1.4
carbon source	Valerolactone (C)	+0.5	-0.4	+0.8	+0.2	-1.1
carbon source	Decanoic (C)	+0.1	+1.6	+0.4	+0.5	-0.7
carbon source	L-Leucine (C)	+0.3	+1.5	-0.2	+0.1	+1.6
carbon source	L-Leucine (C)	+0.4	+1.2	+0.4	+0.3	+1.2
carbon source	L-Leucine (C)	+0.3	+1.1	+0.4	+0.4	+1.9