Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4793 and PP_4794 are separated by 227 nucleotidesPP_4794 and PP_4795 are separated by 61 nucleotidesPP_4795 and PP_4796 are separated by 39 nucleotidesPP_4796 and PP_4797 are separated by 216 nucleotides PP_4793: PP_4793 - conserved protein of unknown function, at 5,455,727 to 5,456,041 _4793 PP_4794: PP_4794 - Leucine--tRNA ligase, at 5,456,269 to 5,458,875 _4794 PP_4795: PP_4795 - putative Lipoprotein, at 5,458,937 to 5,459,542 _4795 PP_4796: PP_4796 - DNA polymerase III, delta subunit, at 5,459,582 to 5,460,619 _4796 PP_4797: PP_4797 - conserved protein of unknown function, at 5,460,836 to 5,461,000 _4797
Group Condition PP_4793 PP_4794 PP_4795 PP_4796 PP_4797
pH Growth at pH7 and (C) Trisodium citrate -4.9 N.D. N.D. N.D. -4.4
nitrogen source NAG (N); with MOPS -5.0 N.D. N.D. N.D. +0.0
pH Growth at pH8 and (C) D-Glucose -0.3 N.D. N.D. N.D. -4.5
carbon source ferulate (C); with MOPS -1.4 N.D. N.D. N.D. -3.2
carbon source butyrate (C) -3.8 N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 N.D. N.D. N.D. -2.4
nitrogen source Propandiamine (N) +0.1 N.D. N.D. N.D. -3.5
pH Growth at pH9 and (C) Trisodium citrate -0.3 N.D. N.D. N.D. -3.0
pH Growth at pH6 and (C) Trisodium citrate -2.9 N.D. N.D. N.D. -0.3
phage P. putida Missley MOI 0.1 -2.8 N.D. N.D. N.D. -0.3
stress R2A with Fusaric 240 ug/mL -2.0 N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.8 N.D. N.D. N.D. -0.9
carbon source ferulate (C); with MOPS -2.9 N.D. N.D. N.D. +0.5
pH Growth at pH8 and (C) Trisodium citrate -1.4 N.D. N.D. N.D. -1.0
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.3 N.D. N.D. N.D. -2.6
pH Growth at pH9 and (C) Trisodium citrate -1.8 N.D. N.D. N.D. -0.5
temperature shift Temperature shift 10_to_30 -1.4 N.D. N.D. N.D. -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 N.D. N.D. N.D. -1.8
nitrogen source Urea (N) +0.2 N.D. N.D. N.D. -2.3
phage P. put South MOI 10 -0.8 N.D. N.D. N.D. -1.3
nitrogen source Propiolactam (N) -1.4 N.D. N.D. N.D. -0.8
temperature shift Temperature shift 30_to_4; with MOPS +0.1 N.D. N.D. N.D. -2.2
nitrogen source 2,6-diaminopimelic (N) +0.7 N.D. N.D. N.D. -2.4
nitrogen source nitrogen source nitrite 1mM +1.0 N.D. N.D. N.D. -2.3
phage P. putida Sci small MOI 0.1 +0.5 N.D. N.D. N.D. -1.6
carbon source 1,4-Butanediol (C) -1.8 N.D. N.D. N.D. +0.7
pH Growth at pH9 and (C) Trisodium citrate +0.8 N.D. N.D. N.D. -1.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.5 N.D. N.D. N.D. +0.9
temperature shift Temperature shift 30_to_25 -1.4 N.D. N.D. N.D. +0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 N.D. N.D. N.D. +1.7
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