Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4789 and PP_4790 are separated by 8 nucleotidesPP_4790 and PP_4791 are separated by 354 nucleotidesPP_4791 and PP_4792 are separated by 160 nucleotidesPP_4792 and PP_4793 are separated by 134 nucleotides PP_4789: PP_4789 - heat shock protein, Co2+ and Mg2+ efflux protein, at 5,450,622 to 5,451,461 _4789 PP_4790: PP_4790 - Apolipoprotein N-acyltransferase, at 5,451,470 to 5,452,987 _4790 PP_4791: PP_4791 - transposase, at 5,453,342 to 5,454,670 _4791 PP_4792: PP_4792 - conserved exported protein of unknown function, at 5,454,831 to 5,455,592 _4792 PP_4793: PP_4793 - conserved protein of unknown function, at 5,455,727 to 5,456,041 _4793
Group Condition PP_4789 PP_4790 PP_4791 PP_4792 PP_4793
micoeukaryotes Acanthamoeba sp., muxed culture-2 -6.6 N.D. N.D. -0.4 +0.1
nitrogen source Propandiamine (N) -5.9 N.D. N.D. -0.6 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -4.6 N.D. N.D. -1.3 +0.2
micoeukaryotes C.elegans, mixed culture-2 -6.8 N.D. N.D. +0.7 +0.7
micoeukaryotes Dictyostellum sp.mixed culture-2 -4.3 N.D. N.D. -0.5 -0.6
nitrogen source NAG (N); with MOPS +0.6 N.D. N.D. -0.5 -5.0
micoeukaryotes Tetrahymena sp., Mixed culture-2 -4.2 N.D. N.D. +0.3 -1.0
carbon source 3-Hydroxyhexanoic (C) -4.4 N.D. N.D. -0.1 -0.3
pH Growth at pH7 and (C) Trisodium citrate -0.7 N.D. N.D. +1.2 -4.9
pH Growth at pH6 and (C) Trisodium citrate -0.2 N.D. N.D. -0.9 -2.9
carbon source 3-Hydroxyhexanoic (C) -4.7 N.D. N.D. +0.6 +0.2
carbon source D-Glucuronic gamma lactone (C) -3.9 N.D. N.D. -0.2 +0.3
carbon source D-Galacturonic Acid (C) -3.3 N.D. N.D. -0.4 -0.0
micoeukaryotes Acanthamoeba sp., muxed culture-1 -4.2 N.D. N.D. -0.3 +0.9
carbon source D-Galacturonic Acid (C) -3.6 N.D. N.D. +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.3 N.D. N.D. -0.0 -1.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -3.4 N.D. N.D. +0.3 -0.3
carbon source Quinic Acid (C) -3.7 N.D. N.D. +0.5 -0.2
nitrogen source Propandiamine (N) -3.1 N.D. N.D. -0.3 +0.2
carbon source D-Glucuronic gamma lactone (C) -3.6 N.D. N.D. +0.6 +0.0
carbon source butyrate (C) +0.2 N.D. N.D. +0.7 -3.8
carbon source Ethyl decanoate (C) -2.8 N.D. N.D. +0.6 -0.5
carbon source D-Fructose (C) -2.1 N.D. N.D. +0.8 -1.3
phage P. putida Missley MOI 0.1 -0.3 N.D. N.D. +0.4 -2.8
micoeukaryotes C.elegans, mixed culture-1 -3.7 N.D. N.D. +0.5 +0.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 -2.6 N.D. N.D. -0.2 +0.6
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -2.7 N.D. N.D. +0.4 +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 N.D. N.D. +0.1 +0.8
carbon source ferulate (C); with MOPS +1.2 N.D. N.D. +0.6 -2.9
carbon source ferulate (C); with MOPS +2.1 N.D. N.D. +0.7 -1.4
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