Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4759 and PP_4760 are separated by 71 nucleotidesPP_4760 and PP_4761 are separated by 164 nucleotidesPP_4761 and PP_4762 overlap by 4 nucleotidesPP_4762 and PP_4763 are separated by 149 nucleotides PP_4759: PP_4759 - transcriptional regulator, GntR family, at 5,419,315 to 5,420,016 _4759 PP_4760: PP_4760 - Alcohol dehydrogenase, zinc-containing, at 5,420,088 to 5,421,098 _4760 PP_4761: PP_4761 - Hydrolase, haloacid dehalogenase-like family, at 5,421,263 to 5,421,853 _4761 PP_4762: PP_4762 - Acyl-CoA thioesterase II, at 5,421,850 to 5,422,719 _4762 PP_4763: PP_4763 - GCN5-related N-acetyltransferase, at 5,422,869 to 5,423,405 _4763
Group Condition PP_4759 PP_4760 PP_4761 PP_4762 PP_4763
carbon source D-Glucuronic gamma lactone (C) -5.9 +0.2 N.D. -0.1 N.D.
carbon source D-Glucaric (C) -4.8 -0.4 N.D. -0.2 N.D.
carbon source D-Glucaric (C) -4.6 -0.5 N.D. -0.1 N.D.
carbon source D-Glucuronic gamma lactone (C) -4.4 -0.7 N.D. -0.0 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +0.4 -0.1 N.D. -5.1 N.D.
carbon source 4-Hydroxyvalerate (C) (40mM) +0.2 -0.0 N.D. -4.0 N.D.
carbon source 2-Methylbutanoic (C) +0.1 -0.4 N.D. -2.7 N.D.
carbon source D-Glucuronic Acid (C) -2.3 -0.0 N.D. -0.1 N.D.
carbon source 2-Methylbutanoic (C) +0.2 +0.5 N.D. -3.0 N.D.
nitrogen source Caprolactam (N) +0.1 -0.1 N.D. -2.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 -0.5 N.D. -0.8 N.D.
nitrogen source 1,6-Hexanediamine (N) -0.1 +0.1 N.D. -1.8 N.D.
carbon source 1,5-Pentanediol (C) -0.2 +0.1 N.D. -1.6 N.D.
phage P. putida Sci small MOI 0.1 -1.1 -0.9 N.D. +0.2 N.D.
temperature shift Temperature shift 30_to_25 -0.2 -1.2 N.D. -0.4 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.5 +0.4 N.D. -1.5 N.D.
nitrogen source Caprolactam (N) -0.1 +0.4 N.D. -1.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -1.3 N.D. -0.4 N.D.
nitrogen source 1,6-Hexanediamine (N) +0.1 +0.3 N.D. -1.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.5 N.D. +0.1 N.D.
nitrogen source Caprolactam (N) +0.1 +0.1 N.D. -1.4 N.D.
carbon source Myristic (C) -0.1 -1.3 N.D. +0.4 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.0 -1.2 N.D. +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.9 N.D. +0.8 N.D.
carbon source L-Leucine (C) +0.1 +0.8 N.D. -0.8 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM -0.1 +1.1 N.D. -0.5 N.D.
carbon source ferulate (C); with MOPS -0.4 +0.8 N.D. +0.7 N.D.
carbon source Delta-Decalactone (C) -0.1 -0.2 N.D. +1.8 N.D.
carbon source Delta-Decalactone (C) +0.3 -0.2 N.D. +1.6 N.D.
carbon source Delta-Nonalactone (C) -0.0 -0.6 N.D. +9.3 N.D.
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