Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4750 and PP_4751 overlap by 1 nucleotidesPP_4751 and PP_4752 are separated by 13 nucleotidesPP_4752 and PP_4753 are separated by 101 nucleotidesPP_4753 and PP_4754 are separated by 123 nucleotides PP_4750: PP_4750 - Amino acid ABC transporter, permease protein, at 5,405,966 to 5,406,607 _4750 PP_4751: PP_4751 - Amino acid ABC transporter, ATP-binding protein, at 5,406,607 to 5,407,416 _4751 PP_4752: PP_4752 - putative Xaa-Pro aminopeptidase, at 5,407,430 to 5,408,737 _4752 PP_4753: PP_4753 - putative N-methylproline demethylase, at 5,408,839 to 5,410,875 _4753 PP_4754: PP_4754 - Transcriptional regulator, TetR family, at 5,410,999 to 5,411,646 _4754
Group Condition PP_4750 PP_4751 PP_4752 PP_4753 PP_4754
nitrogen source 3-aminobutyric (N) +0.0 -0.1 -0.1 -0.1 -4.6
nitrogen source 3-aminobutyric (N) +0.0 -0.1 -0.0 -0.1 -4.6
nitrogen source D-2-Aminobutyric (N) +0.1 -0.2 -0.4 +0.3 -4.5
nitrogen source D-2-Aminobutyric (N) +0.5 -0.3 -0.4 +0.3 -4.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -0.9 -0.1 +0.1 -0.9
carbon source Delta-Nonalactone (C) +0.1 +0.3 -0.3 -0.3 -1.8
carbon source carbon source Bisabolene 48.9 mM -0.3 +0.2 -0.8 -0.2 -0.5
carbon source Valerolactone (C) +0.3 -0.2 -0.3 -0.4 -1.0
pH Growth at pH8 and (C) D-Glucose +0.2 -0.5 +0.3 -0.1 -1.4
no stress control Growth with no stress -0.0 -0.1 -0.7 -0.9 +0.2
carbon source L-Valine (C) +0.0 +0.2 -0.1 +0.2 -1.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.7 -0.2 +0.4 -1.1
carbon source carbon source 3-O-methyl-glucose 50 mM +0.0 +0.3 -0.5 -0.1 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -0.1 +0.2 +0.3 -1.0
carbon source Delta-Decalactone (C) -0.1 +0.4 -0.2 +0.3 -1.2
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.0 +0.3 -0.8 +0.3 -0.6
phage P. putida Sci small MOI 0.1 -0.2 -0.6 -0.7 +0.2 +0.5
carbon source Valeric (C) +0.4 -0.0 +0.3 +0.1 -1.4
nitrogen source Urea (N) +0.2 -0.6 +0.4 -0.4 -0.2
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.4 +0.3 -0.6 -0.7
nitrogen source 2,6-diaminopimelic (N) +0.2 +0.7 +0.1 -0.5 -0.9
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 +0.7 +0.2 +0.4 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.3 +0.4 +0.1 -0.7
carbon source L-Alanine (C) +0.1 -0.2 -0.4 +0.2 +1.1
carbon source L-Isoleucine (C) +0.0 -0.1 +0.3 +0.0 +1.5
carbon source L-Leucine (C) -0.0 -0.2 -0.4 -0.1 +4.0
carbon source L-Leucine (C) -0.3 +0.2 +0.2 +0.1 +3.5
nitrogen source L-Methionine (N) +0.2 +0.1 -0.0 +0.2 +3.3
carbon source L-Leucine (C) +0.2 -0.1 +0.2 +0.1 +3.4
nitrogen source L-Methionine (N) +0.1 +0.2 +0.1 +0.1 +3.6
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