Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4733 and PP_4734 are separated by 132 nucleotidesPP_4734 and PP_4735 are separated by 256 nucleotidesPP_4735 and PP_4736 are separated by 62 nucleotidesPP_4736 and PP_4737 are separated by 75 nucleotides PP_4733: PP_4733 - SsrA-binding protein, at 5,381,898 to 5,382,380 _4733 PP_4734: PP_4734 - DNA-binding transcriptional dual regulator, LldR-L-lactate, at 5,382,513 to 5,383,280 _4734 PP_4735: PP_4735 - L-lactate permease, at 5,383,537 to 5,385,207 _4735 PP_4736: PP_4736 - L-lactate dehydrogenase, at 5,385,270 to 5,386,415 _4736 PP_4737: PP_4737 - D-lactate dehydrogenase, at 5,386,491 to 5,389,301 _4737
Group Condition PP_4733 PP_4734 PP_4735 PP_4736 PP_4737
carbon source 1,2-Propanediol (C) N.D. +0.0 -4.9 -5.8 -1.5
carbon source 1,2-Propanediol (C) N.D. -0.0 -3.7 -4.2 -1.4
nitrogen source D-2-Aminobutyric (N) N.D. -2.2 -0.3 -0.4 -0.7
carbon source 3-methyl-1-butanol (C) N.D. -2.6 -0.0 -0.1 -0.1
nitrogen source D-2-Aminobutyric (N) N.D. -2.1 -0.1 -0.1 -0.4
carbon source Rhamnogalacturonan - from potato (C) N.D. -2.0 +0.1 -0.3 -0.0
carbon source 3-Hydroxypropionate (C) N.D. -2.1 +0.0 -0.0 -0.1
carbon source Rhamnogalacturonan - from potato (C) N.D. -1.7 -0.0 -0.4 -0.0
carbon source L-Isoleucine (C) N.D. -1.6 -0.0 -0.2 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.6 +0.1 -0.1 -0.1
carbon source 3-methyl-1-butanol (C) N.D. -1.9 -0.1 +0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +1.4 -0.1 -0.2 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +1.9 -0.4 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +2.0 -0.1 -0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.0 +0.1 -0.3 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +1.9 -0.0 -0.2 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs N.D. +2.0 -0.4 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +1.9 -0.1 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +2.1 -0.2 +0.1 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. +2.0 -0.1 -0.1 -0.0
carbon source 3-methyl-1-butanol 0.1 vol% (C) N.D. -0.0 -0.2 +0.8 +1.2
carbon source Delta-Undecalactone (C) N.D. +1.9 +0.1 -0.1 +0.2
carbon source Delta-Undecalactone (C) N.D. +2.4 -0.1 -0.3 +0.0
micoeukaryotes C.elegans, mixed culture-2 N.D. +1.6 +0.2 +0.4 +0.0
carbon source 4-Hydroxyvalerate (C) (40mM) N.D. +3.1 -0.3 +0.0 +0.0
carbon source Delta-Decalactone (C) N.D. +2.5 +0.1 +0.2 +0.3
carbon source 4-Hydroxyvalerate (C) (40mM) N.D. +3.1 -0.1 +0.1 +0.2
carbon source Delta-Decalactone (C) N.D. +3.4 +0.1 -0.1 +0.2
carbon source Delta-Nonalactone (C) N.D. +2.6 +0.0 +0.4 +0.8
carbon source pyruvate (C) N.D. +6.3 +0.2 +0.2 +0.1
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