Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4729 and PP_4730 are separated by 107 nucleotidesPP_4730 and PP_4731 are separated by 97 nucleotidesPP_4731 and PP_4732 are separated by 64 nucleotidesPP_4732 and PP_4733 are separated by 49 nucleotides PP_4729: PP_4729 - factor used in recombination and DNA repair, at 5,378,416 to 5,380,089 _4729 PP_4730: PP_4730 - ferric iron uptake global transcriptional repressor Fur-Fe+2, at 5,380,197 to 5,380,601 _4730 PP_4731: PP_4731 - Outer membrane protein assembly factor BamE, at 5,380,699 to 5,381,235 _4731 PP_4732: PP_4732 - conserved protein of unknown function, at 5,381,300 to 5,381,848 _4732 PP_4733: PP_4733 - SsrA-binding protein, at 5,381,898 to 5,382,380 _4733
Group Condition PP_4729 PP_4730 PP_4731 PP_4732 PP_4733
stress Formaldehyde 0.03125 vol% -1.0 N.D. N.D. N.D. N.D.
carbon source L-Lysine 10 mM (C) -0.6 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6 N.D. N.D. N.D. N.D.
nitrogen source D-2-Aminobutyric (N) -0.5 N.D. N.D. N.D. N.D.
stress Butanol 0.6 vol% -0.5 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 N.D. N.D. N.D. N.D.
nitrogen source nitrogen source Ammonium chloride 20mM -0.5 N.D. N.D. N.D. N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.5 N.D. N.D. N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 N.D. N.D. N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) -0.5 N.D. N.D. N.D. N.D.
carbon source propionate (C) -0.4 N.D. N.D. N.D. N.D.
carbon source Delta-Nonalactone (C) -0.4 N.D. N.D. N.D. N.D.
nitrogen source Propandiamine (N) -0.4 N.D. N.D. N.D. N.D.
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.4 N.D. N.D. N.D. N.D.
carbon source Trisodium citrate (C) -0.4 N.D. N.D. N.D. N.D.
carbon source Oleic (C) -0.4 N.D. N.D. N.D. N.D.
stress R2A with Fusaric 480 ug/mL -0.4 N.D. N.D. N.D. N.D.
carbon source 3-methyl-1-butanol (C) -0.4 N.D. N.D. N.D. N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.4 N.D. N.D. N.D. N.D.
nitrogen source Propiolactam (N) +0.4 N.D. N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 N.D. N.D. N.D. N.D.
phage PUT8 MOI 0.1 +0.4 N.D. N.D. N.D. N.D.
phage P. putida Sci Big MOI 0.1 +0.4 N.D. N.D. N.D. N.D.
carbon source ferulate (C); with MOPS +0.4 N.D. N.D. N.D. N.D.
temperature shift Temperature shift 10_to_30; with MOPS +0.5 N.D. N.D. N.D. N.D.
nitrogen source L-Leucine (N) +0.7 N.D. N.D. N.D. N.D.
carbon source L-Leucine (C) +1.6 N.D. N.D. N.D. N.D.
carbon source L-Leucine (C) +1.6 N.D. N.D. N.D. N.D.
carbon source L-Leucine (C) +1.9 N.D. N.D. N.D. N.D.
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