Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4700 and PP_4701 are separated by 206 nucleotidesPP_4701 and PP_4702 are separated by 177 nucleotidesPP_4702 and PP_4703 are separated by 41 nucleotidesPP_4703 and PP_4704 are separated by 78 nucleotides PP_4700: PP_4700 - pantothenate synthetase, at 5,341,691 to 5,342,554 _4700 PP_4701: PP_4701 - glucose-6-phosphate isomerase, at 5,342,761 to 5,344,425 _4701 PP_4702: PP_4702 - acetyl-CoA synthetase, at 5,344,603 to 5,346,537 _4702 PP_4703: PP_4703 - conserved protein of unknown function, at 5,346,579 to 5,347,448 _4703 PP_4704: PP_4704 - conserved protein of unknown function, at 5,347,527 to 5,350,463 _4704
Group Condition PP_4700 PP_4701 PP_4702 PP_4703 PP_4704
carbon source Octanoic (C) -5.2 -3.9 -0.2 +0.0 -0.2
pH D-Glucose (C) pH 6 -5.4 -3.3 -0.2 -0.1 -0.3
pH D-Glucose (C) pH 7 -5.4 -3.2 -0.0 -0.1 -0.2
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -5.3 -3.2 +0.1 -0.2 -0.2
pH D-Glucose (C) pH 7.5 -5.4 -3.2 -0.1 -0.1 -0.1
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -5.3 -3.2 +0.1 +0.0 -0.0
pH D-Glucose (C) pH 6.5 -4.8 -3.1 +0.0 +0.0 -0.6
stress MOPS minimal media_Glucose20mM with Chloride 200 mM -5.2 -3.1 -0.1 +0.1 -0.1
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM -4.7 -3.3 +0.2 -0.0 -0.0
carbon source Tween 20 (C) -2.9 -5.4 -0.2 +0.6 +0.1
stress R2A with Fusaric 480 ug/mL -4.6 -2.7 -0.1 -0.1 -0.0
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -5.6 -1.8 -0.0 -0.1 -0.1
carbon source acetate (C) -2.3 -4.6 +0.1 -0.5 -0.2
carbon source DL-3-Hydroxybutyric (C) -5.4 -1.6 +0.0 -0.0 -0.5
carbon source DL-3-Hydroxyisobutyric (C) -5.4 -1.7 +0.1 -0.1 -0.4
carbon source rac-3-Hydroxypentanoic Acid (C) -4.5 -2.5 +0.0 +0.0 -0.5
nitrogen source D-2-Aminobutyric (N) -5.0 -1.7 +0.1 -0.8 -0.1
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -5.6 -1.8 -0.0 +0.1 -0.1
pH Growth at pH6 and (C) D-Glucose -2.4 -4.7 -0.2 -0.1 +0.1
stress MOPS minimal media_Glucose20mM with Chloride 200 mM -5.3 -1.6 +0.1 -0.4 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.1 -5.4 -0.0 +0.2 +0.1
pH D-Glucose (C) pH 6.5 -5.3 -1.6 -0.0 +0.1 -0.4
temperature shift Temperature shift 30_to_34; with MOPS -2.5 -4.6 +0.1 +0.2 -0.3
carbon source Oleic (C) -5.2 -1.7 -0.1 +0.1 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -4.2 -3.3 -0.0 +0.1 +0.4
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL -5.6 -1.1 -0.2 +0.2 -0.1
pH D-Glucose (C) pH 6 -5.4 -1.0 +0.2 +0.0 -0.6
nitrogen source Urea (N); with MOPS -2.4 -4.6 +0.0 +0.4 -0.1
carbon source Valeric (C) -2.6 -4.3 -0.0 +0.2 +0.1
nitrogen source NAG (N); with MOPS -2.2 -4.6 +0.1 -0.1 +0.2
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