Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4644 and PP_4645 are separated by 176 nucleotidesPP_4645 and PP_4646 are separated by 123 nucleotidesPP_4646 and PP_4647 are separated by 215 nucleotidesPP_4647 and PP_4648 are separated by 96 nucleotides PP_4644: PP_4644 - DNA repair enzyme, at 5,268,968 to 5,270,338 _4644 PP_4645: PP_4645 - Large-conductance mechanosensitive channel, at 5,270,515 to 5,270,934 _4645 PP_4646: PP_4646 - ferredoxin--NADP(+) reductase, at 5,271,058 to 5,271,834 _4646 PP_4647: PP_4647 - transcriptional regulator, LuxR family, at 5,272,050 to 5,272,757 _4647 PP_4648: PP_4648 - Ribosomal RNA large subunit methyltransferase G, at 5,272,854 to 5,273,978 _4648
Group Condition PP_4644 PP_4645 PP_4646 PP_4647 PP_4648
phage PUT8 MOI 0.1 -0.3 -2.2 N.D. -0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -0.7 N.D. -0.3 -0.1
phage P. putida Missley MOI 0.1 +0.1 -1.9 N.D. -0.1 +0.3
carbon source L-Phenylalanine 5 mM (C) -0.4 -1.0 N.D. +0.1 +0.0
carbon source carbon source D-Glucose 55.5 mM -1.0 +0.1 N.D. -0.5 +0.2
pH pH 6 -0.7 -0.0 N.D. -0.5 +0.2
nitrogen source D-2-Aminobutyric (N) -0.8 -0.1 N.D. -0.3 +0.2
micoeukaryotes C.elegans, mixed culture-2 -0.2 -0.3 N.D. +0.2 -0.7
attachment on pdms attachment on PDMS; 2 hours +0.0 -1.2 N.D. -0.1 +0.3
pH Growth at pH7 and (C) Trisodium citrate -0.8 -0.4 N.D. +0.0 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.2 +0.3 N.D. -0.9 +0.1
carbon source carbon source 4-vinylphenol 0.1 mM -0.5 -0.2 N.D. -0.3 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7 -0.4 N.D. +0.5 -0.1
temperature shift Temperature shift 30_to_25; with MOPS +0.3 -0.7 N.D. -0.2 -0.1
phage P. put South MOI 0.1 -0.2 -0.8 N.D. -0.1 +0.4
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.3 +0.3 N.D. -0.7 +0.2
pH Growth at pH6 and (C) D-Glucose +0.4 -0.7 N.D. -0.3 +0.2
phage P. putida Sci Big MOI 0.1 +0.5 -1.5 N.D. +0.5 +0.1
pH Growth at pH8 and (C) Trisodium citrate -0.4 -0.6 N.D. +0.3 +0.3
phage P. put PUT 10 MOI 10 -0.3 +0.2 N.D. -0.6 +0.6
carbon source 3-methyl-1-butanol (C) -0.8 +0.5 N.D. +0.1 +0.1
pH pH 5 -0.5 +0.3 N.D. -0.3 +0.5
pH Growth at pH6 and (C) Trisodium citrate +0.3 -0.7 N.D. +0.0 +0.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.1 +0.4 N.D. +0.4 -0.8
phage PUT8 MOI 10 +0.3 -0.5 N.D. +0.1 +0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.3 +0.6 N.D. +0.3 -0.3
carbon source butyrate (C) +0.7 +0.2 N.D. -0.5 +0.3
phage P. putida South MOI 0.1 +0.2 +0.6 N.D. -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.2 N.D. +0.3 +0.7
phage P. putida Sci small MOI 0.1 +0.4 +0.9 N.D. +0.3 +0.3
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