Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4641 and PP_4642 are separated by 153 nucleotidesPP_4642 and PP_4643 are separated by 263 nucleotidesPP_4643 and PP_4644 are separated by 35 nucleotidesPP_4644 and PP_4645 are separated by 176 nucleotides PP_4641: PP_4641 - putative transporter, at 5,264,545 to 5,266,611 _4641 PP_4642: PP_4642 - Cyclic diguanosine monophosphate-binding protein, at 5,266,765 to 5,267,151 _4642 PP_4643: PP_4643 - Xanthine/uracil permease family protein, at 5,267,415 to 5,268,932 _4643 PP_4644: PP_4644 - DNA repair enzyme, at 5,268,968 to 5,270,338 _4644 PP_4645: PP_4645 - Large-conductance mechanosensitive channel, at 5,270,515 to 5,270,934 _4645
Group Condition PP_4641 PP_4642 PP_4643 PP_4644 PP_4645
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.2 -4.1 -0.1 -0.5 +0.1
phage P. put South MOI 10 +0.2 -5.3 +0.1 +0.4 +0.1
carbon source Myristic (C) +0.2 -4.9 +0.1 +0.2 -0.1
carbon source ferulate (C); with MOPS +0.1 -3.3 -0.5 +0.1 -0.7
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.1 -3.6 -0.2 -0.3 -0.1
stress NaCl stress 250 mM -0.1 -4.0 +0.1 -0.1 +0.0
nitrogen source Ammonium chloride (N) -0.1 -2.9 +0.1 -0.0 -0.5
pH Growth at pH8 and (C) Trisodium citrate -0.1 -1.9 -0.1 -0.4 -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -2.8 -0.2 -0.1 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.0 -2.1 -0.0 -0.4 -0.3
carbon source 4-Hydroxyvalerate (C) (40mM) -0.1 -2.3 +0.1 -0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -2.2 +0.1 -0.2 -0.2
stress Growth with Chloride 500 mM; with MOPS +0.3 -2.4 +0.1 -0.0 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 -1.9 +0.2 -0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 -2.2 +0.3 -0.1 -0.1
pH pH 7 +0.4 -2.4 +0.3 -0.1 -0.1
pH Growth at pH7 and (C) Trisodium citrate +0.2 -2.1 +0.0 +0.4 -0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 -2.5 -0.1 +0.0 +0.5
phage PUT8 MOI 0.1 +0.1 +1.1 -0.1 -0.3 -2.2
phage P. putida Sci small MOI 0.1 +0.1 -2.7 +0.4 +0.2 +0.7
phage PUT 8 MOI 1 -0.1 -1.9 +0.2 +0.4 +0.3
carbon source pyruvate (C) -2.3 +1.1 -0.1 +0.2 +0.0
phage P. putida Missley MOI 0.1 +0.3 +0.0 +0.6 +0.1 -1.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -1.6 -0.2 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 -1.7 +0.2 +0.4 +0.3
nitrogen source D-2-Aminobutyric (N) +2.9 -2.9 +0.4 -0.8 -0.1
carbon source D-Glucose (C) -0.1 +2.0 +0.2 -0.5 +0.2
carbon source 3-methyl-2-oxopentanoic (C) +4.6 -0.5 -0.1 -0.2 -0.0
nitrogen source D-2-Aminobutyric (N) +3.1 +0.4 +0.1 -0.0 +0.5
carbon source 3-methyl-2-oxopentanoic (C) +4.3 -0.2 +0.0 +0.1 -0.0
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