Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4637 and PP_4638 are separated by 227 nucleotidesPP_4638 and PP_4639 overlap by 41 nucleotidesPP_4639 and PP_4640 are separated by 83 nucleotidesPP_4640 and PP_4641 are separated by 17 nucleotides PP_4637: PP_4637 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase family protein, at 5,260,776 to 5,261,600 _4637 PP_4638: PP_4638 - Methylenetetrahydrofolate reductase, at 5,261,828 to 5,263,315 _4638 PP_4639: PP_4639 - P-loop guanosine triphosphatase-dependent zinc chaperone, at 5,263,275 to 5,264,246 _4639 PP_4640: PP_4640 - conserved protein of unknown function, at 5,264,330 to 5,264,527 _4640 PP_4641: PP_4641 - putative transporter, at 5,264,545 to 5,266,611 _4641
Group Condition PP_4637 PP_4638 PP_4639 PP_4640 PP_4641
carbon source pyruvate (C) -0.0 -0.1 -1.2 -2.5 -2.3
carbon source 4-Methyl-2-oxopentanoic (C) -0.1 -0.1 -0.4 -1.1 -1.2
carbon source 4-Methyl-2-oxopentanoic (C) +0.2 -0.1 -0.4 -1.0 -1.2
carbon source 4-Methyl-2-oxopentanoic (C) +0.0 -0.1 -0.2 -1.2 -0.9
phage P. putida PUT 7 MOI 1 -0.2 -0.5 -0.3 +0.1 -0.6
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.1 -0.1 -0.1 -0.8 -0.4
carbon source L-Valine (C) -0.0 -0.0 +0.0 -0.7 -0.8
carbon source L-Valine (C) +0.2 +0.1 -0.2 -0.8 -0.7
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.3 -0.2 -0.1 -0.5 -0.4
carbon source 4-Methyl-2-oxopentanoic (C) +0.0 -0.1 -0.2 -0.5 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.2 -0.1 +0.1 -0.9 -0.2
carbon source L-Valine (C) +0.1 -0.1 -0.1 -0.6 -0.7
stress Formaldehyde 0.03125 vol% +0.0 -0.0 -1.2 -0.1 +0.1
temperature shift Temperature shift 30_to_25; with MOPS -0.1 -0.1 -0.3 -0.8 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.5 -0.3 -0.5 +0.0
pH Growth at pH6 and (C) D-Glucose -0.1 +0.2 +0.2 -0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.3 -0.1 -0.5 +0.3
temperature shift Temperature shift 30_to_21; with MOPS -0.6 +0.2 +0.5 -0.2 -0.1
phage P. putida South MOI 0.1 -0.2 -0.4 +0.2 +0.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +0.2 +0.1 -0.6 +0.4
nitrogen source 2,6-diaminopimelic (N) -0.5 +0.1 -0.1 +0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.5 -0.3 +0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.5 +0.2 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +0.3 +0.6 -0.2 +0.8
nitrogen source DL-2-Aminobutyric (N) -0.1 -0.1 +0.1 +1.0 +1.0
nitrogen source DL-2-Aminobutyric (N) -0.0 -0.2 +0.3 +0.8 +1.1
nitrogen source D-2-Aminobutyric (N) -0.4 +0.3 +0.9 +2.8 +2.9
nitrogen source D-2-Aminobutyric (N) +0.4 -0.2 +1.1 +2.6 +3.1
carbon source 3-methyl-2-oxopentanoic (C) -0.0 +0.2 +0.7 +4.3 +4.3
carbon source 3-methyl-2-oxopentanoic (C) -0.1 +0.1 +0.9 +4.4 +4.6
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