Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5703	PP_4634	PP_4635	PP_4636	PP_4637
nitrogen source	2,6-diaminopimelic (N)	-1.0	-0.6	N.D.	-0.2	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.4	-0.8	N.D.	-0.2	-0.3
carbon source	Crotonic (C)	+0.1	-0.2	N.D.	-1.2	-0.4
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.6	N.D.	-0.5	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.1	-0.5	N.D.	-0.8	-0.1
phage	P. putida Sci Big MOI 0.1	-0.1	-0.0	N.D.	-1.1	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.1	N.D.	-0.4	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3	-0.5	N.D.	-0.6	-0.2
pH	pH 5	+0.3	-0.4	N.D.	-0.6	-0.2
temperature shift	Temperature shift 30_to_25	-0.4	-0.2	N.D.	+0.2	-0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.3	-0.4	N.D.	-0.6	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.3	+0.3	N.D.	-0.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.2	N.D.	-1.0	+0.2
pH	pH 6	+0.3	-0.2	N.D.	-0.6	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.0	+0.4	N.D.	-0.4	-0.5
carbon source	L-Leucine (C)	+0.2	-0.1	N.D.	-0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.0	N.D.	-0.5	+0.6
nitrogen source	2,6-diaminopimelic (N)	-0.9	-0.1	N.D.	+0.3	+0.3
carbon source	carbon source D-Glucose 55.5 mM	+0.5	+0.2	N.D.	-0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.6	N.D.	-0.3	-0.1
phage	P. put South MOI 10	-0.3	+0.4	N.D.	-0.4	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.2	+0.6	N.D.	-0.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.3	N.D.	+0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	+0.3	N.D.	+0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.3	N.D.	+0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.2	N.D.	+0.9	+0.0
nitrogen source	nitrogen source nitrite 1mM	+0.6	-0.3	N.D.	+0.6	+0.1
phage	PUT 8 MOI 1	+0.4	+0.3	N.D.	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.7	N.D.	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.3	N.D.	+0.8	+0.2