Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4633 and PP_5703 overlap by 8 nucleotidesPP_5703 and PP_4634 are separated by 44 nucleotidesPP_4634 and PP_4635 are separated by 143 nucleotidesPP_4635 and PP_4636 are separated by 302 nucleotides PP_4633: PP_4633 - conserved protein of unknown function, DUF1244 family, at 5,256,218 to 5,256,514 _4633 PP_5703: PP_5703 - putative type 3 effector HopPmaJ, at 5,256,507 to 5,256,848 _5703 PP_4634: PP_4634 - putative hydrolase, alpha/beta fold family, at 5,256,893 to 5,257,801 _4634 PP_4635: PP_4635 - trans-2-enoyl-CoA reductase (NAD(+)), at 5,257,945 to 5,259,156 _4635 PP_4636: PP_4636 - acetyl-CoA acetyltransferase, at 5,259,459 to 5,260,637 _4636
Group Condition PP_4633 PP_5703 PP_4634 PP_4635 PP_4636
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -0.5 -0.0 N.D. -0.5
pH pH 9 -0.8 +0.0 +0.0 N.D. -0.8
nitrogen source 2,6-diaminopimelic (N) +0.3 -1.0 -0.6 N.D. -0.2
pH Growth at pH6 and (C) Trisodium citrate -0.7 -0.3 +0.3 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.0 +0.2 N.D. -1.0
carbon source Crotonic (C) -0.0 +0.1 -0.2 N.D. -1.2
carbon source carbon source 3-O-methyl-glucose 50 mM -0.5 +0.3 -0.4 N.D. -0.6
temperature shift Temperature shift 30_to_25; with MOPS -0.6 -0.0 +0.2 N.D. -0.7
nitrogen source nitrogen source nitrite 0.5mM -1.0 +0.1 -0.4 N.D. +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 +0.3 -0.5 N.D. -0.6
nitrogen source 2,6-diaminopimelic (N) -0.3 -0.9 -0.1 N.D. +0.3
phage P. put South MOI 10 -0.4 -0.3 +0.4 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.3 +0.6 N.D. -0.3
nitrogen source D-2-Aminobutyric (N) +0.6 +0.1 -0.6 N.D. -0.5
pH pH 5 +0.3 +0.3 -0.4 N.D. -0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.6 +0.1 N.D. -0.4
carbon source ferulate (C); with MOPS -0.7 +0.4 +0.3 N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 +0.2 +0.2 N.D. +0.1
carbon source D-Glucose (C) -0.6 +0.5 +0.1 N.D. -0.2
pH pH 6 +0.4 +0.3 -0.2 N.D. -0.6
carbon source carbon source D-Glucose 55.5 mM -0.1 +0.5 +0.2 N.D. -0.7
carbon source L-Alanine (C) +0.7 +0.2 -0.1 N.D. -0.5
pH Growth at pH7 and (C) Trisodium citrate -0.5 -0.1 +0.4 N.D. +0.6
nitrogen source nitrogen source nitrite 1mM -0.1 +0.6 -0.3 N.D. +0.6
nitrogen source D-2-Aminobutyric (N) +0.9 +0.2 +0.6 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.3 -0.2 N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.4 +0.2 +0.7 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +0.3 +0.3 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +0.8 -0.3 N.D. +0.1
phage PUT 8 MOI 1 +0.4 +0.4 +0.3 N.D. +0.4
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