Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4631	PP_4632	PP_4633	PP_5703	PP_4634
nitrogen source	L-Isoleucine (N)	-2.2	-0.3	-0.2	+0.1	-0.0
nitrogen source	2,6-diaminopimelic (N)	+0.1	-1.4	-0.3	-0.9	-0.1
pH	pH 9	-0.9	-0.7	-0.8	+0.0	+0.0
nitrogen source	L-Isoleucine (N)	-2.0	-0.2	-0.1	-0.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	-0.2	-0.2	-0.1	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.4	-1.7	+0.6	+0.1	-0.6
pH	pH 8	-0.8	-0.6	-0.5	-0.0	-0.2
nitrogen source	DL-2-Aminobutyric (N)	-0.5	-1.8	+0.5	-0.1	-0.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2	-2.0	+0.4	+0.1	-0.5
nitrogen source	L-Leucine (N)	-1.1	-0.4	+0.2	-0.3	-0.1
nitrogen source	2,6-diaminopimelic (N)	-0.0	-0.4	+0.3	-1.0	-0.6
nitrogen source	DL-2-Aminobutyric (N)	-0.0	-1.8	+0.3	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	-0.9	-0.5	-0.0
nitrogen source	nitrogen source nitrite 0.5mM	+0.4	-0.3	-1.0	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.6	-0.5	-0.3	+0.6
carbon source	carbon source D-Glucose 55.5 mM	-0.5	-1.1	-0.1	+0.5	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	+0.4	-0.7	-0.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.8	-0.1	+0.1	-0.5
phage	P. putida PUT 7 MOI 1	+0.9	-0.6	-0.6	+0.1	-0.2
pH	Growth at pH7 and (C) D-Glucose	+0.3	+0.5	-0.0	-0.4	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+1.0	-0.7	+0.0	-0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.1	-0.2	+0.3	-0.7	-0.2
nitrogen source	D-2-Aminobutyric (N)	-0.3	-1.0	+0.9	+0.2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.6	-0.4	+0.8	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-1.1	-0.1	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.2	+0.9	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.2	-0.2	+0.7	-0.3
phage	PUT 8 MOI 1	+0.7	-0.3	+0.4	+0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.1	+0.8	+0.8	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.9	+0.0	-0.0	+0.7	-0.1