Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_4620 and PP_4621 are separated by 3 nucleotidesPP_4621 and PP_4622 are separated by 112 nucleotidesPP_4622 and PP_4623 overlap by 70 nucleotidesPP_4623 and PP_4624 are separated by 255 nucleotides PP_4620: PP_4620 - Fumarylacetoacetase, at 5,241,884 to 5,243,176 _4620 PP_4621: PP_4621 - Homogentisate 1,2-dioxygenase, at 5,243,180 to 5,244,481 _4621 PP_4622: PP_4622 - Hmg transcriptional repressor, at 5,244,594 to 5,245,427 _4622 PP_4623: PP_4623 - conserved protein of unknown function, at 5,245,358 to 5,248,660 _4623 PP_4624: PP_4624 - putative hydrolase, alpha/beta fold family, at 5,248,916 to 5,249,821 _4624
Group Condition PP_4620 PP_4621 PP_4622 PP_4623 PP_4624
carbon source L-Phenylalanine 5 mM (C) -4.9 -4.5 +0.3 +0.0 +0.0
carbon source L-Phenylalanine 5 mM (C) -4.2 -4.6 -0.1 -0.1 -0.1
carbon source L-Phenylalanine 5 mM (C) -4.5 -4.2 +0.5 +0.1 -0.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 -6.6 -0.3 +0.1 +0.1 -0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 -6.4 -0.1 +0.2 -0.0 -0.2
carbon source 3-methyl-1-butanol 0.1 vol% (C) -4.9 +0.1 -0.7 +0.0 +0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -3.6 -0.4 -0.4 -0.0 +0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -4.1 -0.2 +0.1 -0.1 -0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -3.7 -0.7 +0.6 -0.0 -0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -3.3 -0.5 +0.1 +0.1 -0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -3.5 -0.5 +0.1 +0.1 +0.1
micoeukaryotes C.elegans, mixed culture-1 -3.3 -0.2 -0.1 -0.2 +0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -2.7 -0.5 +0.1 +0.0 -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 -2.6 -0.4 -0.2 -0.1 +0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -2.8 -0.4 +0.2 +0.1 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.0 -0.2 -0.7 +0.0 -0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM +0.2 -1.3 -1.4 -0.1 -0.1
micoeukaryotes C.elegans, mixed culture-2 -2.6 -0.2 +0.2 -0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -1.3 -0.4 +0.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.8 -0.6 -0.3 +0.1 +0.1
micoeukaryotes Dictyostellum sp.mixed culture-1 -2.5 +0.3 -0.3 +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.0 -0.5 -0.0 +0.1 +0.2
carbon source Vanillin (C) +0.5 -0.5 -2.1 +0.0 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.9 -0.7 +0.5 +0.1 -0.1
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.8 +0.4 -0.5 -0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.8 -0.4 +0.3 -0.1 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -0.2 -1.1 +0.2 +0.4
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.7 +0.2 -1.4 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.9 -0.3 +0.4 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -0.2 +1.3 +0.1 +0.4
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