Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5700	PP_4614	PP_4615	PP_5701	PP_4616
temperature	Growth at 30C; with MOPS	N.D.	N.D.	+0.1	-6.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	N.D.	+0.2	-4.6	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.2	-4.5	-0.2
carbon source	L-Proline (C)	N.D.	N.D.	-0.3	-3.7	-0.2
pH	Growth at pH8 and (C) D-Glucose	N.D.	N.D.	-0.0	-3.3	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	N.D.	N.D.	+0.3	-3.6	-0.3
pH	Growth at pH8 and (C) Trisodium citrate	N.D.	N.D.	-0.1	-3.5	-0.1
phage	PUT 8 MOI 1	N.D.	N.D.	-0.0	-3.9	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	-0.0	-3.0	-0.2
nitrogen source	no extra (N); with MOPS	N.D.	N.D.	-0.1	-2.6	-0.5
temperature shift	Temperature shift 30_to_21; with MOPS	N.D.	N.D.	-0.1	-3.2	+0.1
nitrogen source	nitrate (N)	N.D.	N.D.	+0.2	-3.5	+0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	N.D.	N.D.	-0.3	-2.2	-0.1
nitrogen source	2,6-diaminopimelic (N)	N.D.	N.D.	+0.2	-1.9	-0.7
carbon source	Succinic Acid (C)	N.D.	N.D.	+0.1	-2.8	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	N.D.	-0.2	-1.9	-0.2
carbon source	3-Hydroxydecanoic (C)	N.D.	N.D.	+0.1	-1.9	-0.3
carbon source	D-Glucose; D-Xylose (C)	N.D.	N.D.	+0.2	-1.9	-0.2
temperature shift	Temperature shift 30_to_25	N.D.	N.D.	+0.2	-2.3	+0.3
carbon source	carbon source D-Glucose 55.5 mM	N.D.	N.D.	+0.1	-2.2	+0.3
nitrogen source	Propandiamine (N)	N.D.	N.D.	-0.4	-2.0	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	N.D.	+0.0	+0.6	-1.7
nitrogen source	nitrogen source nitrite 1mM	N.D.	N.D.	+0.1	-1.6	+0.6
carbon source	Quinic Acid (C)	N.D.	N.D.	+0.1	-1.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	-1.3	+1.1
carbon source	ferulate (C); with MOPS	N.D.	N.D.	-0.8	+1.2	-0.7
nitrogen source	2,6-diaminopimelic (N)	N.D.	N.D.	+0.4	-2.2	+1.5
nitrogen source	D-2-Aminobutyric (N)	N.D.	N.D.	-1.7	+0.8	+0.9
nitrogen source	D-2-Aminobutyric (N)	N.D.	N.D.	-1.4	+1.4	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.3	+2.8	+0.4