Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4601	PP_4602	PP_4603	PP_4604	PP_4605
carbon source	Hydroxy-L-Proline (C)	-0.2	-7.1	N.D.	-0.3	+0.1
carbon source	Hydroxy-L-Proline (C)	-0.2	-7.2	N.D.	-0.1	+0.1
carbon source	ferulate (C); with MOPS	-0.7	-1.4	N.D.	-0.5	-0.1
pH	Valerolactone (C) pH 6.5	+0.2	-1.0	N.D.	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.3	N.D.	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.2	N.D.	-0.5	-0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.4	+0.4	N.D.	-0.6	-0.4
nitrogen source	Propandiamine (N)	+0.4	-0.3	N.D.	-0.9	-0.1
nitrogen source	NAG (N); with MOPS	+0.6	-0.4	N.D.	-1.0	+0.0
carbon source	Protocatechuic Acid (C)	-0.7	+0.4	N.D.	-0.3	-0.1
pH	Growth at pH6 and (C) D-Glucose	+0.7	-0.7	N.D.	-0.1	-0.3
nitrogen source	D-2-Aminobutyric (N)	+0.4	-0.5	N.D.	-0.4	+0.2
nitrogen source	2,6-diaminopimelic (N)	-0.1	+0.3	N.D.	-1.0	+0.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.5	-1.0	N.D.	-0.1	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.5	-0.9	N.D.	+0.2	+0.1
carbon source	Valerolactone (C)	-0.4	-0.3	N.D.	+0.4	+0.4
carbon source	D-Glucose (C); with MOPS	+0.3	+0.0	N.D.	-0.7	+0.5
carbon source	L-tyrosine 5 mM (C)	-0.0	+0.3	N.D.	+0.6	-0.6
carbon source	L-tyrosine 5 mM (C)	+0.4	+0.1	N.D.	+0.5	-0.8
carbon source	L-Leucine (C)	-0.3	-0.4	N.D.	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+1.0	N.D.	-0.1	+0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.2	+0.3	N.D.	+0.7	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	+0.3	N.D.	+0.3	-0.5
pH	Growth at pH7 and (C) D-Glucose	+0.5	-0.5	N.D.	+0.5	+0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.1	-0.2	N.D.	+1.5	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.3	+0.2	N.D.	+1.0	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	+0.3	-0.5	N.D.	+1.3	+0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.0	+0.1	N.D.	+1.3	-0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	+0.2	-0.1	N.D.	+1.3	+0.1
pH	pH 8	+0.5	+0.3	N.D.	+0.6	+0.2