Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4594	PP_4595	PP_4596	PP_4597	PP_4598
nitrogen source	nitrate (N)	+0.0	+0.4	+0.1	-3.6	-0.0
nitrogen source	nitrogen source nitrate 5mM	-0.1	-0.0	-0.2	-2.7	+0.2
carbon source	Vanillin (C)	+0.3	-0.0	-0.0	-2.9	+0.1
carbon source	Vanillin (C)	+0.1	+0.2	-0.1	-2.9	+0.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.2	-0.4	+0.0	-1.4	-0.3
carbon source	Vanillin (C)	+0.2	+0.1	+0.1	-2.4	-0.0
nitrogen source	nitrate (N)	+0.1	-0.0	-0.0	-2.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.4	-0.0	-0.9	-0.3
nitrogen source	nitrate (N)	+0.0	+0.1	+0.0	-2.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4	-0.6	+0.2	-0.7	-0.0
nitrogen source	nitrogen source nitrate 20mM	+0.1	+0.1	-0.0	-1.8	+0.0
nitrogen source	Ammonium chloride (N); with MOPS	-0.1	-0.2	+0.2	-1.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4	+0.1	+0.1	-0.8	-0.4
carbon source	Vanillin (C)	+0.1	+0.3	-0.1	-1.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.2	-0.7	+0.1	-1.0	+0.2
nitrogen source	NAG (N); with MOPS	+0.2	+0.3	+0.1	-1.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.3	-0.1	-1.2	-0.2
nitrogen source	NAG (N)	+0.2	+0.3	+0.1	-1.3	-0.2
nitrogen source	Propiolactam (N)	-0.2	-0.3	+0.1	-1.0	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.1	+0.7	-0.1	-0.9	-0.4
nitrogen source	nitrogen source nitrite 0.5mM	-0.2	-0.2	+0.2	+0.8	-0.7
pH	Growth at pH7 and (C) Trisodium citrate	+0.4	-0.5	-0.3	-0.2	+0.6
phage	P. putida Sci small MOI 0.1	+0.6	-0.4	+0.3	-0.5	+0.2
nitrogen source	2,6-diaminopimelic (N)	+0.0	+0.1	+0.2	+0.7	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.3	+0.1	+0.0	-0.7	+0.7
pH	Valerolactone (C) pH 6.5	+0.4	+0.6	-0.3	-0.3	+0.3
nitrogen source	L-Methionine (N)	-0.2	+1.3	-0.1	-0.3	-0.1
nitrogen source	L-Methionine (N)	-0.3	+1.4	-0.2	-0.1	-0.1
no stress control	Growth with no stress	+0.5	+0.6	-0.0	+0.4	-0.4
carbon source	ferulate (C); with MOPS	+0.9	+0.3	+0.3	+0.6	+0.2