Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_4590	PP_4591	PP_4592	PP_4593	PP_4594
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-1.0	-1.7	-2.2	-0.6
nitrogen source	NAG (N); with MOPS	-0.8	+0.0	+0.0	-4.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-1.5	-2.0	-0.7	-0.4
phage	P. putida Missley MOI 0.1	+0.2	-0.2	-0.0	-4.6	-0.1
micoeukaryotes	C.elegans, mixed culture-2	-0.3	+0.0	-0.0	-4.3	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	-0.6	+0.0	-3.3	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.6	-1.7	-1.6	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.2	-2.0	+0.3	-1.9	-0.4
temperature shift	Temperature shift 30_to_21; with MOPS	-0.1	+0.2	+0.1	-4.4	-0.0
pH	Growth at pH6 and (C) D-Glucose	-0.4	-0.4	+0.0	-3.6	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3	-1.5	+0.1	-2.0	-0.2
carbon source	Tween 20 (C)	+0.3	+0.0	-0.1	-4.1	-0.0
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.5	+0.4	-1.0	-2.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-2.5	+0.3	-1.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-2.0	+0.0	-1.7	-0.1
pH	pH 5	-0.1	-1.0	-0.1	-2.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	-1.5	+0.0	-1.6	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.5	+0.3	-2.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.6	+0.2	-2.0	+0.0
nitrogen source	D-2-Aminobutyric (N)	+0.4	-1.8	-0.0	-2.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-2.6	+0.3	-1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.1	-0.2	-1.9	-0.1
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.6	+0.4	+0.1	-2.7	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.2	-1.2	+0.2	-1.6	-0.1
carbon source	Nonanoic (C)	+0.2	-0.2	-0.0	-3.2	+0.4
nitrogen source	D-2-Aminobutyric (N)	-0.0	-1.1	+0.3	-2.2	+0.5
temperature shift	Temperature shift 10_to_25; with MOPS	+0.1	+0.1	+0.2	-3.0	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.4	-1.3	-1.0	-0.7	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6	-1.0	-0.4	-1.4	-0.1
pH	Growth at pH7 and (C) Trisodium citrate	+0.8	+0.9	+0.1	-1.5	+0.4