Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

500 ntPP_4577 and PP_4578 are separated by 9 nucleotidesPP_4578 and PP_4579 are separated by 130 nucleotidesPP_4579 and PP_4580 are separated by 72 nucleotidesPP_4580 and PP_4581 are separated by 9 nucleotides PP_4577: PP_4577 - UPF0271 protein PP_4577, at 5,196,511 to 5,197,287 _4577 PP_4578: PP_4578 - Major facilitator family transporter, at 5,197,297 to 5,198,583 _4578 PP_4579: PP_4579 - Transcriptional regulator, LysR family, at 5,198,714 to 5,199,625 _4579 PP_4580: PP_4580 - conserved protein of unknown function, at 5,199,698 to 5,200,219 _4580 PP_4581: PP_4581 - putative amidotransferase, at 5,200,229 to 5,201,002 _4581
Group Condition PP_4577 PP_4578 PP_4579 PP_4580 PP_4581
nitrogen source L-pyroglutamic (N) -3.8 -3.0 -3.3 +0.3 +0.1
nitrogen source L-pyroglutamic (N) -3.7 -3.2 -2.7 +0.1 +0.3
carbon source L-Glutamic (C) -1.4 -1.0 -1.2 +0.2 +0.0
carbon source Valerolactone (C) -0.4 +0.1 +0.0 -0.1 -2.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 +0.3 +0.3 -0.1 -2.6
carbon source L-Glutamine (C) -1.1 -0.6 -0.5 +0.2 -0.2
phage P. putida Sci Big MOI 0.1 -0.1 +0.1 -0.3 +0.3 -2.2
carbon source L-Glutamic (C) -0.9 -0.9 -0.8 +0.3 +0.1
carbon source Delta-Nonalactone (C) -0.2 -0.2 +0.2 +0.1 -1.9
temperature Growth at 25C -0.6 +0.2 -0.1 -0.2 -1.2
carbon source ferulate (C); with MOPS -0.7 -0.1 +0.0 +0.3 -1.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.2 +0.1 -0.2 -0.1 -1.6
carbon source carbon source D-Glucose 55.5 mM +0.0 +0.1 +0.2 +0.1 -2.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 +0.0 +0.0 +0.4 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6 -0.2 -0.6 +0.4 -0.5
nitrogen source D-2-Aminobutyric (N) -0.1 +0.2 -0.2 +1.1 -2.5
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.1 -0.1 +0.8 -0.9 -1.3
pH Growth at pH6 and (C) D-Glucose +0.3 +0.3 +0.1 -0.1 -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +0.0 +0.2 -0.1 -1.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +0.2 -1.2 -0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.3 +0.1 -0.0 +0.8 -1.1
nitrogen source nitrate (N) +0.4 +0.1 -0.2 +0.3 -1.2
pH Growth at pH6 and (C) Trisodium citrate -0.4 +0.0 +0.6 +0.5 -0.9
nitrogen source NAG (N); with MOPS -1.0 +0.0 +0.7 -0.1 +0.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.4 +0.1 +0.5 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 +0.1 -0.4 -0.5 +1.4
carbon source DL-3-Hydroxyisobutyric (C) -0.4 -0.0 -0.6 +0.3 +0.9
carbon source D-Glucose (C) -0.4 -0.3 +0.2 +0.7 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 +0.0 +0.5 +0.4 +0.9
carbon source 3-methyl-1-butanol 0.1 vol% (C) +2.0 +1.5 +1.8 -0.8 +0.4
remove
PP_4577
plot		 remove
PP_4578
plot		 remove
PP_4579		 remove
PP_4580
plot		 remove
PP_4581
plot